miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 31960 0.68 0.442207
Target:  5'- uGCCGGCGaCGacgaaCGCGuGUGGCGcGCGUa -3'
miRNA:   3'- -CGGCCGUgGCg----GUGU-CACCGC-CGCAg -5'
6743 3' -62.9 NC_001875.2 + 100893 0.68 0.442207
Target:  5'- aGCCGGUccgGgCGCCGCAGcGcGCGgagacGCGUCg -3'
miRNA:   3'- -CGGCCG---UgGCGGUGUCaC-CGC-----CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 43552 0.68 0.442207
Target:  5'- uUUGGCgaaCGUgGCGG-GGCGGCGUCu -3'
miRNA:   3'- cGGCCGug-GCGgUGUCaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 130024 0.68 0.436979
Target:  5'- cGgCGGCAugcucguggucacauCCGCCgACGGaaaUGGCGGCGg- -3'
miRNA:   3'- -CgGCCGU---------------GGCGG-UGUC---ACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 130072 0.68 0.436979
Target:  5'- cGgCGGCAugcucguggucacauCCGCCgACGGaaaUGGCGGCGg- -3'
miRNA:   3'- -CgGCCGU---------------GGCGG-UGUC---ACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 42741 0.68 0.433513
Target:  5'- cGCgCGGCGaCGCgCAUGGUGaGCGGCG-Cg -3'
miRNA:   3'- -CG-GCCGUgGCG-GUGUCAC-CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 37112 0.68 0.433513
Target:  5'- uGCgGGCGCggCGCCGCGccGGCGuuuGCGUCu -3'
miRNA:   3'- -CGgCCGUG--GCGGUGUcaCCGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 13748 0.68 0.433513
Target:  5'- cGCgCGGCGUCGCgCACaaAGUGGUGGCagcaGUCu -3'
miRNA:   3'- -CG-GCCGUGGCG-GUG--UCACCGCCG----CAG- -5'
6743 3' -62.9 NC_001875.2 + 91204 0.68 0.430924
Target:  5'- gGUCGGguCCGCCucguaguaggcgagGCGcGUGGUGGCGcCc -3'
miRNA:   3'- -CGGCCguGGCGG--------------UGU-CACCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 41459 0.68 0.424919
Target:  5'- cGCCGGUugCGgCGCGc--GCGGCGUg -3'
miRNA:   3'- -CGGCCGugGCgGUGUcacCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 3132 0.68 0.424919
Target:  5'- gGgCGGCGaagcCCGCUgcGCGGacGCGGCGUCg -3'
miRNA:   3'- -CgGCCGU----GGCGG--UGUCacCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 76377 0.68 0.424919
Target:  5'- gGCUGGCACgauCGCagauuCAGUucGGCGGUGUUg -3'
miRNA:   3'- -CGGCCGUG---GCGgu---GUCA--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 103966 0.68 0.424065
Target:  5'- -aCGGCAuucgaguCUGCCAUGGaaaugGGCGGCGUg -3'
miRNA:   3'- cgGCCGU-------GGCGGUGUCa----CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 97871 0.68 0.416428
Target:  5'- uGCCGGUcggcuGCgCGCCGCAcgGGCacguugcgGGCGUCg -3'
miRNA:   3'- -CGGCCG-----UG-GCGGUGUcaCCG--------CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 47601 0.68 0.416428
Target:  5'- cGCCGGCgcgcguuuGCCGCUcaACAGUGGCguaccuaugaaGGCa-- -3'
miRNA:   3'- -CGGCCG--------UGGCGG--UGUCACCG-----------CCGcag -5'
6743 3' -62.9 NC_001875.2 + 44903 0.69 0.408041
Target:  5'- cGCUGGCGCuCGCCcucGCAcucuaGGCGGCGcuUCa -3'
miRNA:   3'- -CGGCCGUG-GCGG---UGUca---CCGCCGC--AG- -5'
6743 3' -62.9 NC_001875.2 + 85839 0.69 0.39976
Target:  5'- cGUCGuGCACCGCguUguuGUGGUGcGCGUCc -3'
miRNA:   3'- -CGGC-CGUGGCGguGu--CACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 81469 0.69 0.391588
Target:  5'- cGCUGGU-CCGCgGuCAGUGGCGcGCG-Cg -3'
miRNA:   3'- -CGGCCGuGGCGgU-GUCACCGC-CGCaG- -5'
6743 3' -62.9 NC_001875.2 + 81351 0.69 0.375573
Target:  5'- cGCUGGUGCCGCgCGCAcgcgccGGCcGCGUCg -3'
miRNA:   3'- -CGGCCGUGGCG-GUGUca----CCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 12298 0.69 0.375573
Target:  5'- aGCCGGCA-CGCCGCcGUGuGCGuG-GUCa -3'
miRNA:   3'- -CGGCCGUgGCGGUGuCAC-CGC-CgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.