miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 118021 0.67 0.505635
Target:  5'- uCCGGUACCGCgAcCAGUGcGaCGGCa-- -3'
miRNA:   3'- cGGCCGUGGCGgU-GUCAC-C-GCCGcag -5'
6743 3' -62.9 NC_001875.2 + 54457 0.67 0.505635
Target:  5'- aGCCgcGGCGCCGCacaGC-GUGuGCGGCa-- -3'
miRNA:   3'- -CGG--CCGUGGCGg--UGuCAC-CGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 44086 0.67 0.505635
Target:  5'- aCCGGuCAaagucuuguUCGCuCACAgGUGGCGGCGa- -3'
miRNA:   3'- cGGCC-GU---------GGCG-GUGU-CACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 39292 0.67 0.505635
Target:  5'- cGCCGacaccaagugcGCGCUGCaCACcGUgccGGCGGCGUg -3'
miRNA:   3'- -CGGC-----------CGUGGCG-GUGuCA---CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 95739 0.67 0.504701
Target:  5'- -gCGGCGCCGCCGCcgcGUGcugccgcGCGagcGCGUCu -3'
miRNA:   3'- cgGCCGUGGCGGUGu--CAC-------CGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 127057 0.67 0.496322
Target:  5'- cGCCGGCugUaauagucaaaGCCGCGGccaacGGCGGCc-- -3'
miRNA:   3'- -CGGCCGugG----------CGGUGUCa----CCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 80594 0.67 0.496322
Target:  5'- uGCUGGCGgaaagaauggUCGUCACGGUgGGCGcGCGg- -3'
miRNA:   3'- -CGGCCGU----------GGCGGUGUCA-CCGC-CGCag -5'
6743 3' -62.9 NC_001875.2 + 44401 0.67 0.496322
Target:  5'- cGUCGGCGCgCGCgCACugcaaguuGGUGG-GGCGgUCg -3'
miRNA:   3'- -CGGCCGUG-GCG-GUG--------UCACCgCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 129964 0.67 0.487086
Target:  5'- uGgCGGCgGCgGCgGCGGcGGCGGCGg- -3'
miRNA:   3'- -CgGCCG-UGgCGgUGUCaCCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 90032 0.67 0.487086
Target:  5'- gGCCgcGGCGCCGgCGCGcGUGcCGGCGg- -3'
miRNA:   3'- -CGG--CCGUGGCgGUGU-CACcGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 113094 0.67 0.487086
Target:  5'- cGUCaGCGCCuuaGCCGCcGUGGUGaGCGUUu -3'
miRNA:   3'- -CGGcCGUGG---CGGUGuCACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 20053 0.67 0.486167
Target:  5'- gGCCGcguGCACCGCCGucaccagcgacacCAGUcGGuCGGCG-Ca -3'
miRNA:   3'- -CGGC---CGUGGCGGU-------------GUCA-CC-GCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 56441 0.67 0.477933
Target:  5'- gGUCGGaCACgGUgAggcCGGUGGCGGgGUCc -3'
miRNA:   3'- -CGGCC-GUGgCGgU---GUCACCGCCgCAG- -5'
6743 3' -62.9 NC_001875.2 + 8864 0.67 0.477933
Target:  5'- uCCGGaGCCGCCACGGUGcaaaucuCGGUGg- -3'
miRNA:   3'- cGGCCgUGGCGGUGUCACc------GCCGCag -5'
6743 3' -62.9 NC_001875.2 + 86209 0.68 0.468865
Target:  5'- --aGGCGCCGCCGCAcaacuuGcGGCuGGUGUUg -3'
miRNA:   3'- cggCCGUGGCGGUGU------CaCCG-CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 89906 0.68 0.459886
Target:  5'- -gUGGCGCCGCgCAUAuaaagGGCGGCG-Cg -3'
miRNA:   3'- cgGCCGUGGCG-GUGUca---CCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 5916 0.68 0.450999
Target:  5'- cGCCGGCAUggcguuggguagCGCCGCgcaGGUGggcGCGGCcUCg -3'
miRNA:   3'- -CGGCCGUG------------GCGGUG---UCAC---CGCCGcAG- -5'
6743 3' -62.9 NC_001875.2 + 94232 0.68 0.450999
Target:  5'- cGUCGGCGagcaCGCCGCcGUGcggccggccGCGGCGcUCg -3'
miRNA:   3'- -CGGCCGUg---GCGGUGuCAC---------CGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 112407 0.68 0.450999
Target:  5'- -gCGGCGCgGCCGCAGcacaauGCGGUaGUCg -3'
miRNA:   3'- cgGCCGUGgCGGUGUCac----CGCCG-CAG- -5'
6743 3' -62.9 NC_001875.2 + 40149 0.68 0.445712
Target:  5'- gGCUGGCACCG-CACGGccGGCaacgcgaugcgcaugGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCgGUGUCa-CCG---------------CCGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.