miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 91379 0.66 0.552262
Target:  5'- cCCGGCACCaCCACGcccucggggcuGcccacguucucgaUGGCGcGCGUCa -3'
miRNA:   3'- cGGCCGUGGcGGUGU-----------C-------------ACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 80874 0.66 0.543589
Target:  5'- cUCGGCGCgCGCCAaagAGUGGCaGagcaaGUCg -3'
miRNA:   3'- cGGCCGUG-GCGGUg--UCACCGcCg----CAG- -5'
6743 3' -62.9 NC_001875.2 + 98545 0.66 0.543589
Target:  5'- cGCCaacccGCAgUGCUACuuuGUGGUGuGCGUCa -3'
miRNA:   3'- -CGGc----CGUgGCGGUGu--CACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 116201 0.66 0.543589
Target:  5'- cGUCuGCACCGCCuCAG-GGUGGaaguacagguCGUCg -3'
miRNA:   3'- -CGGcCGUGGCGGuGUCaCCGCC----------GCAG- -5'
6743 3' -62.9 NC_001875.2 + 79132 0.66 0.537831
Target:  5'- gGCgGGCGCCGCgGCGGgcucguuugccaCGGCGUg -3'
miRNA:   3'- -CGgCCGUGGCGgUGUCacc---------GCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 9715 0.66 0.534005
Target:  5'- cGCCGGC-CgCGCCGCGcccgaagcGUGGCacguguugaGCGUCc -3'
miRNA:   3'- -CGGCCGuG-GCGGUGU--------CACCGc--------CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 91867 0.66 0.534005
Target:  5'- gGCCcccagGGCGCCuGCUGguGcGGCGGCGg- -3'
miRNA:   3'- -CGG-----CCGUGG-CGGUguCaCCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 114517 0.66 0.532095
Target:  5'- cGgCGGCgcaACCGCCAgCAGcucuuuaacaucGGCGGCGcUCa -3'
miRNA:   3'- -CgGCCG---UGGCGGU-GUCa-----------CCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 100132 0.67 0.524482
Target:  5'- uGCUGGCGCUguuugugucuGCCGCuGUcGCGGUGaUCa -3'
miRNA:   3'- -CGGCCGUGG----------CGGUGuCAcCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 65436 0.67 0.524482
Target:  5'- cGgCGuGCACCGCUgGCGGUcGGUGGCcagGUCg -3'
miRNA:   3'- -CgGC-CGUGGCGG-UGUCA-CCGCCG---CAG- -5'
6743 3' -62.9 NC_001875.2 + 9068 0.67 0.524482
Target:  5'- cGCCGGUuuCCGCCAacugcgccuGUGGCGa-GUCg -3'
miRNA:   3'- -CGGCCGu-GGCGGUgu-------CACCGCcgCAG- -5'
6743 3' -62.9 NC_001875.2 + 49862 0.67 0.524482
Target:  5'- gGCCGGCGCgccuugccggCGCCAaccaAGUGGU--CGUCg -3'
miRNA:   3'- -CGGCCGUG----------GCGGUg---UCACCGccGCAG- -5'
6743 3' -62.9 NC_001875.2 + 46015 0.67 0.519744
Target:  5'- aUCGGCcgcccacgcagcugGCCGCCGCGGaaaugcuucacaacaUgaacggcgcagaaacGGCGGCGUCg -3'
miRNA:   3'- cGGCCG--------------UGGCGGUGUC---------------A---------------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 96305 0.67 0.515024
Target:  5'- gGCCGGguggGCgGCCAgCAccGUGGCcGCGUCa -3'
miRNA:   3'- -CGGCCg---UGgCGGU-GU--CACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 1744 0.67 0.515024
Target:  5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3'
miRNA:   3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5'
6743 3' -62.9 NC_001875.2 + 49998 0.67 0.515024
Target:  5'- -gCGGCGCuUGUCGCGGUuggGGCGcGCGUg -3'
miRNA:   3'- cgGCCGUG-GCGGUGUCA---CCGC-CGCAg -5'
6743 3' -62.9 NC_001875.2 + 1792 0.67 0.515024
Target:  5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3'
miRNA:   3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5'
6743 3' -62.9 NC_001875.2 + 35073 0.67 0.515024
Target:  5'- uGCUGGUuuGCgGCCGCAucGaCGGCGUCa -3'
miRNA:   3'- -CGGCCG--UGgCGGUGUcaCcGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 41498 0.67 0.508444
Target:  5'- cGCCGGCcgguCgGCCAauuugcaucguuugGGCGGCGUUg -3'
miRNA:   3'- -CGGCCGu---GgCGGUguca----------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 33943 0.67 0.505635
Target:  5'- cGUCGGCGCCGacgcCCGCAacGUGcccguGCGGCG-Cg -3'
miRNA:   3'- -CGGCCGUGGC----GGUGU--CAC-----CGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.