miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 85860 0.73 0.224264
Target:  5'- uGCaCGGCGaguUCGCCGCAGcGGCGGC-UCu -3'
miRNA:   3'- -CG-GCCGU---GGCGGUGUCaCCGCCGcAG- -5'
6743 3' -62.9 NC_001875.2 + 124744 0.73 0.226388
Target:  5'- uGUCGGCAgcgcgcgcugcauguCUGCgCACAGgccGGUGGCGUCg -3'
miRNA:   3'- -CGGCCGU---------------GGCG-GUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 91732 0.73 0.229606
Target:  5'- cGUCGGCAaguacagCGCCAgcCAGUGGCG-CGUCa -3'
miRNA:   3'- -CGGCCGUg------GCGGU--GUCACCGCcGCAG- -5'
6743 3' -62.9 NC_001875.2 + 32455 0.72 0.246281
Target:  5'- cGCUGGCGCCGCC--GGU-GCGGCGc- -3'
miRNA:   3'- -CGGCCGUGGCGGugUCAcCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 28823 0.72 0.246281
Target:  5'- aGCCGGUgACCGUCAgGGUGGCcgacacggacGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCGGUgUCACCG----------CCGCag -5'
6743 3' -62.9 NC_001875.2 + 54525 0.72 0.246281
Target:  5'- gGCCGGcCACCGCCGCGuacuCGGCGUa -3'
miRNA:   3'- -CGGCC-GUGGCGGUGUcaccGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 76703 0.72 0.257947
Target:  5'- uCCGGUGCCGCCGuCGGUcGCGcugaGCGUCg -3'
miRNA:   3'- cGGCCGUGGCGGU-GUCAcCGC----CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 3181 0.72 0.270061
Target:  5'- aGCCGGCgGCCGCgCACcagagacaGGUugcGGCGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCG-GUG--------UCA---CCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 15918 0.72 0.270061
Target:  5'- uGCCGGCACCGgCAacaugaccCAGcUGGCGGgG-Cg -3'
miRNA:   3'- -CGGCCGUGGCgGU--------GUC-ACCGCCgCaG- -5'
6743 3' -62.9 NC_001875.2 + 61606 0.71 0.282629
Target:  5'- cGCCGGCGgCGCUuCGGgcugugucGGCGGCGcCu -3'
miRNA:   3'- -CGGCCGUgGCGGuGUCa-------CCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 48043 0.71 0.289085
Target:  5'- cGCCcacaggcacgagGGCGCgCGCUACaacgAGUGGCaGCGUCa -3'
miRNA:   3'- -CGG------------CCGUG-GCGGUG----UCACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 76472 0.71 0.295655
Target:  5'- cGCCGGCaaaACgGCCGCGGacgacgacgaGGCGGCGcCc -3'
miRNA:   3'- -CGGCCG---UGgCGGUGUCa---------CCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 75238 0.71 0.309144
Target:  5'- -aCGGCgACgGCgAUGGcGGCGGCGUCg -3'
miRNA:   3'- cgGCCG-UGgCGgUGUCaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 83455 0.71 0.316063
Target:  5'- aGCCGGCACCugucGCCGCGucGgacgGGCGcGCGa- -3'
miRNA:   3'- -CGGCCGUGG----CGGUGU--Ca---CCGC-CGCag -5'
6743 3' -62.9 NC_001875.2 + 58239 0.7 0.330248
Target:  5'- cGUCGGCccccAUCGCCGCAGaaaaUGGCGcucGUGUCa -3'
miRNA:   3'- -CGGCCG----UGGCGGUGUC----ACCGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 33874 0.7 0.337515
Target:  5'- gGCCGGCAgaaCGgCGuuuCGGUGGCcGCGUCg -3'
miRNA:   3'- -CGGCCGUg--GCgGU---GUCACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 26230 0.7 0.337515
Target:  5'- gGCCGcGUACCGggGCA-UGGCGGCGUa -3'
miRNA:   3'- -CGGC-CGUGGCggUGUcACCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 59084 0.7 0.344897
Target:  5'- gGCCGGCGCgGaaACGGUuuccaGGCugacGGCGUCg -3'
miRNA:   3'- -CGGCCGUGgCggUGUCA-----CCG----CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 111086 0.7 0.344897
Target:  5'- cGCCGGCGCCGUgAaaaccuuuuGUuGCGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGgUgu-------CAcCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 69257 0.7 0.352395
Target:  5'- cGCUGG-GCCGCgGCucgagccGUGGCGGCGg- -3'
miRNA:   3'- -CGGCCgUGGCGgUGu------CACCGCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.