Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6743 | 3' | -62.9 | NC_001875.2 | + | 113355 | 0.66 | 0.553228 |
Target: 5'- gGCgCGGCugCGUCGCuGcgGcGCGGCG-Ca -3' miRNA: 3'- -CG-GCCGugGCGGUGuCa-C-CGCCGCaG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 79132 | 0.66 | 0.537831 |
Target: 5'- gGCgGGCGCCGCgGCGGgcucguuugccaCGGCGUg -3' miRNA: 3'- -CGgCCGUGGCGgUGUCacc---------GCCGCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 116201 | 0.66 | 0.543589 |
Target: 5'- cGUCuGCACCGCCuCAG-GGUGGaaguacagguCGUCg -3' miRNA: 3'- -CGGcCGUGGCGGuGUCaCCGCC----------GCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 119008 | 0.66 | 0.55613 |
Target: 5'- aGCCGGCGCCGCCGgguuuguguucgaAGacgccuacguagacUGGUccGGCGUg -3' miRNA: 3'- -CGGCCGUGGCGGUg------------UC--------------ACCG--CCGCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 130913 | 0.66 | 0.562918 |
Target: 5'- aGCCGuC-CgGUCacgGCAGUGGCGGCGg- -3' miRNA: 3'- -CGGCcGuGgCGG---UGUCACCGCCGCag -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 53863 | 0.66 | 0.569728 |
Target: 5'- cGCUGGCACCGUCggccuguuggucguGCGGccgccGCGGCG-Ca -3' miRNA: 3'- -CGGCCGUGGCGG--------------UGUCac---CGCCGCaG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 63716 | 0.66 | 0.562918 |
Target: 5'- uGUCGGuCGCgGCgACGGcgGGCgcuucgccGGCGUCg -3' miRNA: 3'- -CGGCC-GUGgCGgUGUCa-CCG--------CCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 117199 | 0.66 | 0.560006 |
Target: 5'- gGCCGGCACCucgucgaagcgaaaGCCguACucgGGCGGCa-- -3' miRNA: 3'- -CGGCCGUGG--------------CGG--UGucaCCGCCGcag -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 1744 | 0.67 | 0.515024 |
Target: 5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3' miRNA: 3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 1792 | 0.67 | 0.515024 |
Target: 5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3' miRNA: 3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 44086 | 0.67 | 0.505635 |
Target: 5'- aCCGGuCAaagucuuguUCGCuCACAgGUGGCGGCGa- -3' miRNA: 3'- cGGCC-GU---------GGCG-GUGU-CACCGCCGCag -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 49998 | 0.67 | 0.515024 |
Target: 5'- -gCGGCGCuUGUCGCGGUuggGGCGcGCGUg -3' miRNA: 3'- cgGCCGUG-GCGGUGUCA---CCGC-CGCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 90032 | 0.67 | 0.487086 |
Target: 5'- gGCCgcGGCGCCGgCGCGcGUGcCGGCGg- -3' miRNA: 3'- -CGG--CCGUGGCgGUGU-CACcGCCGCag -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 46015 | 0.67 | 0.519744 |
Target: 5'- aUCGGCcgcccacgcagcugGCCGCCGCGGaaaugcuucacaacaUgaacggcgcagaaacGGCGGCGUCg -3' miRNA: 3'- cGGCCG--------------UGGCGGUGUC---------------A---------------CCGCCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 49862 | 0.67 | 0.524482 |
Target: 5'- gGCCGGCGCgccuugccggCGCCAaccaAGUGGU--CGUCg -3' miRNA: 3'- -CGGCCGUG----------GCGGUg---UCACCGccGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 100132 | 0.67 | 0.524482 |
Target: 5'- uGCUGGCGCUguuugugucuGCCGCuGUcGCGGUGaUCa -3' miRNA: 3'- -CGGCCGUGG----------CGGUGuCAcCGCCGC-AG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 96305 | 0.67 | 0.515024 |
Target: 5'- gGCCGGguggGCgGCCAgCAccGUGGCcGCGUCa -3' miRNA: 3'- -CGGCCg---UGgCGGU-GU--CACCGcCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 9068 | 0.67 | 0.524482 |
Target: 5'- cGCCGGUuuCCGCCAacugcgccuGUGGCGa-GUCg -3' miRNA: 3'- -CGGCCGu-GGCGGUgu-------CACCGCcgCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 41498 | 0.67 | 0.508444 |
Target: 5'- cGCCGGCcgguCgGCCAauuugcaucguuugGGCGGCGUUg -3' miRNA: 3'- -CGGCCGu---GgCGGUguca----------CCGCCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 33943 | 0.67 | 0.505635 |
Target: 5'- cGUCGGCGCCGacgcCCGCAacGUGcccguGCGGCG-Cg -3' miRNA: 3'- -CGGCCGUGGC----GGUGU--CAC-----CGCCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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