miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 80874 0.66 0.543589
Target:  5'- cUCGGCGCgCGCCAaagAGUGGCaGagcaaGUCg -3'
miRNA:   3'- cGGCCGUG-GCGGUg--UCACCGcCg----CAG- -5'
6743 3' -62.9 NC_001875.2 + 130913 0.66 0.562918
Target:  5'- aGCCGuC-CgGUCacgGCAGUGGCGGCGg- -3'
miRNA:   3'- -CGGCcGuGgCGG---UGUCACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 113355 0.66 0.553228
Target:  5'- gGCgCGGCugCGUCGCuGcgGcGCGGCG-Ca -3'
miRNA:   3'- -CG-GCCGugGCGGUGuCa-C-CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 91867 0.66 0.534005
Target:  5'- gGCCcccagGGCGCCuGCUGguGcGGCGGCGg- -3'
miRNA:   3'- -CGG-----CCGUGG-CGGUguCaCCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 33235 0.66 0.582427
Target:  5'- cGCCgGGCGCCGUUuCGGc-GCGGCGcUCc -3'
miRNA:   3'- -CGG-CCGUGGCGGuGUCacCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 53863 0.66 0.569728
Target:  5'- cGCUGGCACCGUCggccuguuggucguGCGGccgccGCGGCG-Ca -3'
miRNA:   3'- -CGGCCGUGGCGG--------------UGUCac---CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 9715 0.66 0.534005
Target:  5'- cGCCGGC-CgCGCCGCGcccgaagcGUGGCacguguugaGCGUCc -3'
miRNA:   3'- -CGGCCGuG-GCGGUGU--------CACCGc--------CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 91379 0.66 0.552262
Target:  5'- cCCGGCACCaCCACGcccucggggcuGcccacguucucgaUGGCGcGCGUCa -3'
miRNA:   3'- cGGCCGUGGcGGUGU-----------C-------------ACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 114517 0.66 0.532095
Target:  5'- cGgCGGCgcaACCGCCAgCAGcucuuuaacaucGGCGGCGcUCa -3'
miRNA:   3'- -CgGCCG---UGGCGGU-GUCa-----------CCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 63716 0.66 0.562918
Target:  5'- uGUCGGuCGCgGCgACGGcgGGCgcuucgccGGCGUCg -3'
miRNA:   3'- -CGGCC-GUGgCGgUGUCa-CCG--------CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 116201 0.66 0.543589
Target:  5'- cGUCuGCACCGCCuCAG-GGUGGaaguacagguCGUCg -3'
miRNA:   3'- -CGGcCGUGGCGGuGUCaCCGCC----------GCAG- -5'
6743 3' -62.9 NC_001875.2 + 68165 0.66 0.553228
Target:  5'- cGCUGcGCGCCGCgcaagacgauuaCACGGUGGaCGGUcuUCg -3'
miRNA:   3'- -CGGC-CGUGGCG------------GUGUCACC-GCCGc-AG- -5'
6743 3' -62.9 NC_001875.2 + 92537 0.66 0.582427
Target:  5'- cGCCGGCACggugugcagCGCgCACuuGGUGuCGGCGg- -3'
miRNA:   3'- -CGGCCGUG---------GCG-GUG--UCACcGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 99373 0.66 0.572653
Target:  5'- cGCCaaguGGCcaaAgCGCCGCAccGGCGGCGcCa -3'
miRNA:   3'- -CGG----CCG---UgGCGGUGUcaCCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 39047 0.66 0.579491
Target:  5'- cGgCGGCGCUGuaCCGCAagcgcauggccauuGUGcgccGCGGCGUCg -3'
miRNA:   3'- -CgGCCGUGGC--GGUGU--------------CAC----CGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 117199 0.66 0.560006
Target:  5'- gGCCGGCACCucgucgaagcgaaaGCCguACucgGGCGGCa-- -3'
miRNA:   3'- -CGGCCGUGG--------------CGG--UGucaCCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 98545 0.66 0.543589
Target:  5'- cGCCaacccGCAgUGCUACuuuGUGGUGuGCGUCa -3'
miRNA:   3'- -CGGc----CGUgGCGGUGu--CACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 79132 0.66 0.537831
Target:  5'- gGCgGGCGCCGCgGCGGgcucguuugccaCGGCGUg -3'
miRNA:   3'- -CGgCCGUGGCGgUGUCacc---------GCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 119008 0.66 0.55613
Target:  5'- aGCCGGCGCCGCCGgguuuguguucgaAGacgccuacguagacUGGUccGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGGUg------------UC--------------ACCG--CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 53999 0.66 0.582427
Target:  5'- aGCUGGU--CGCgCACGGccuUGGCGGCG-Cg -3'
miRNA:   3'- -CGGCCGugGCG-GUGUC---ACCGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.