miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 1744 0.67 0.515024
Target:  5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3'
miRNA:   3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5'
6743 3' -62.9 NC_001875.2 + 1792 0.67 0.515024
Target:  5'- cGCCGcCGCCGCCAUuuccGUcGGCGGaUGUg -3'
miRNA:   3'- -CGGCcGUGGCGGUGu---CA-CCGCC-GCAg -5'
6743 3' -62.9 NC_001875.2 + 2668 0.74 0.189763
Target:  5'- cGCCGGCGgCGCCugGGgcaacuGCGGCGcCu -3'
miRNA:   3'- -CGGCCGUgGCGGugUCac----CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 3132 0.68 0.424919
Target:  5'- gGgCGGCGaagcCCGCUgcGCGGacGCGGCGUCg -3'
miRNA:   3'- -CgGCCGU----GGCGG--UGUCacCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 3181 0.72 0.270061
Target:  5'- aGCCGGCgGCCGCgCACcagagacaGGUugcGGCGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCG-GUG--------UCA---CCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 5916 0.68 0.450999
Target:  5'- cGCCGGCAUggcguuggguagCGCCGCgcaGGUGggcGCGGCcUCg -3'
miRNA:   3'- -CGGCCGUG------------GCGGUG---UCAC---CGCCGcAG- -5'
6743 3' -62.9 NC_001875.2 + 8864 0.67 0.477933
Target:  5'- uCCGGaGCCGCCACGGUGcaaaucuCGGUGg- -3'
miRNA:   3'- cGGCCgUGGCGGUGUCACc------GCCGCag -5'
6743 3' -62.9 NC_001875.2 + 9068 0.67 0.524482
Target:  5'- cGCCGGUuuCCGCCAacugcgccuGUGGCGa-GUCg -3'
miRNA:   3'- -CGGCCGu-GGCGGUgu-------CACCGCcgCAG- -5'
6743 3' -62.9 NC_001875.2 + 9715 0.66 0.534005
Target:  5'- cGCCGGC-CgCGCCGCGcccgaagcGUGGCacguguugaGCGUCc -3'
miRNA:   3'- -CGGCCGuG-GCGGUGU--------CACCGc--------CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 10634 0.79 0.087473
Target:  5'- gGCCGGUGCCGCCcagcguGCAGUacuugGGCGGCGg- -3'
miRNA:   3'- -CGGCCGUGGCGG------UGUCA-----CCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 10932 0.74 0.20394
Target:  5'- cGCgGuGUugCGCCACAaaaacGUGGUGGCGUUu -3'
miRNA:   3'- -CGgC-CGugGCGGUGU-----CACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 11319 0.69 0.375573
Target:  5'- gGCCuGCacgACCGCCACGauuUGGCGaGUGUCu -3'
miRNA:   3'- -CGGcCG---UGGCGGUGUc--ACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 11806 0.69 0.370856
Target:  5'- uGCCGGcCGCgucgguguuugugguCGCgC-CGGUGGCGGgGUCg -3'
miRNA:   3'- -CGGCC-GUG---------------GCG-GuGUCACCGCCgCAG- -5'
6743 3' -62.9 NC_001875.2 + 12298 0.69 0.375573
Target:  5'- aGCCGGCA-CGCCGCcGUGuGCGuG-GUCa -3'
miRNA:   3'- -CGGCCGUgGCGGUGuCAC-CGC-CgCAG- -5'
6743 3' -62.9 NC_001875.2 + 13748 0.68 0.433513
Target:  5'- cGCgCGGCGUCGCgCACaaAGUGGUGGCagcaGUCu -3'
miRNA:   3'- -CG-GCCGUGGCG-GUG--UCACCGCCG----CAG- -5'
6743 3' -62.9 NC_001875.2 + 15918 0.72 0.270061
Target:  5'- uGCCGGCACCGgCAacaugaccCAGcUGGCGGgG-Cg -3'
miRNA:   3'- -CGGCCGUGGCgGU--------GUC-ACCGCCgCaG- -5'
6743 3' -62.9 NC_001875.2 + 18168 0.77 0.115729
Target:  5'- cGCgCGaCGCCGCCACuGUGGCGGUGcCg -3'
miRNA:   3'- -CG-GCcGUGGCGGUGuCACCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 20053 0.67 0.486167
Target:  5'- gGCCGcguGCACCGCCGucaccagcgacacCAGUcGGuCGGCG-Ca -3'
miRNA:   3'- -CGGC---CGUGGCGGU-------------GUCA-CC-GCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 20772 0.74 0.191602
Target:  5'- cGCCGGCgucguccacguagaaGCCGUCgacgcGCAGUGcGCGGgCGUCg -3'
miRNA:   3'- -CGGCCG---------------UGGCGG-----UGUCAC-CGCC-GCAG- -5'
6743 3' -62.9 NC_001875.2 + 21899 0.7 0.360007
Target:  5'- cGUCGcGCugCuCCGCGGUGaGCGGCG-Cg -3'
miRNA:   3'- -CGGC-CGugGcGGUGUCAC-CGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.