miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 110150 0.7 0.360007
Target:  5'- aCCGcaGCACCGCguCGCGcucgucgGGCGGCGUCg -3'
miRNA:   3'- cGGC--CGUGGCG--GUGUca-----CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 54525 0.72 0.246281
Target:  5'- gGCCGGcCACCGCCGCGuacuCGGCGUa -3'
miRNA:   3'- -CGGCC-GUGGCGGUGUcaccGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 76703 0.72 0.257947
Target:  5'- uCCGGUGCCGCCGuCGGUcGCGcugaGCGUCg -3'
miRNA:   3'- cGGCCGUGGCGGU-GUCAcCGC----CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 15918 0.72 0.270061
Target:  5'- uGCCGGCACCGgCAacaugaccCAGcUGGCGGgG-Cg -3'
miRNA:   3'- -CGGCCGUGGCgGU--------GUC-ACCGCCgCaG- -5'
6743 3' -62.9 NC_001875.2 + 48043 0.71 0.289085
Target:  5'- cGCCcacaggcacgagGGCGCgCGCUACaacgAGUGGCaGCGUCa -3'
miRNA:   3'- -CGG------------CCGUG-GCGGUG----UCACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 75238 0.71 0.309144
Target:  5'- -aCGGCgACgGCgAUGGcGGCGGCGUCg -3'
miRNA:   3'- cgGCCG-UGgCGgUGUCaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 26230 0.7 0.337515
Target:  5'- gGCCGcGUACCGggGCA-UGGCGGCGUa -3'
miRNA:   3'- -CGGC-CGUGGCggUGUcACCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 59084 0.7 0.344897
Target:  5'- gGCCGGCGCgGaaACGGUuuccaGGCugacGGCGUCg -3'
miRNA:   3'- -CGGCCGUGgCggUGUCA-----CCG----CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 111086 0.7 0.344897
Target:  5'- cGCCGGCGCCGUgAaaaccuuuuGUuGCGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGgUgu-------CAcCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 85860 0.73 0.224264
Target:  5'- uGCaCGGCGaguUCGCCGCAGcGGCGGC-UCu -3'
miRNA:   3'- -CG-GCCGU---GGCGGUGUCaCCGCCGcAG- -5'
6743 3' -62.9 NC_001875.2 + 10932 0.74 0.20394
Target:  5'- cGCgGuGUugCGCCACAaaaacGUGGUGGCGUUu -3'
miRNA:   3'- -CGgC-CGugGCGGUGU-----CACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 54757 0.74 0.203453
Target:  5'- cGCCGGCACCGCCagcgcaaACAG-GaCGGCG-Ca -3'
miRNA:   3'- -CGGCCGUGGCGG-------UGUCaCcGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 68548 0.78 0.099397
Target:  5'- -gCGGUuuGCCGCCGCGGcGGCGGCGgUCg -3'
miRNA:   3'- cgGCCG--UGGCGGUGUCaCCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 99277 0.78 0.099397
Target:  5'- cGCgCGGCACUGCUGCAGccgcuccucGGCGGCGUUg -3'
miRNA:   3'- -CG-GCCGUGGCGGUGUCa--------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 37585 0.78 0.099397
Target:  5'- cGCCGGCGCgagCGCCGCGGccggccgcacGGCGGCGUg -3'
miRNA:   3'- -CGGCCGUG---GCGGUGUCa---------CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 18168 0.77 0.115729
Target:  5'- cGCgCGaCGCCGCCACuGUGGCGGUGcCg -3'
miRNA:   3'- -CG-GCcGUGGCGGUGuCACCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 56888 0.76 0.134203
Target:  5'- aGCCGGCaggucguACCGCCGCAGcaGCGGCuuGUCg -3'
miRNA:   3'- -CGGCCG-------UGGCGGUGUCacCGCCG--CAG- -5'
6743 3' -62.9 NC_001875.2 + 84363 0.75 0.160015
Target:  5'- cGCCGGUaggugcGCgGCCugcCGG-GGCGGCGUCg -3'
miRNA:   3'- -CGGCCG------UGgCGGu--GUCaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 41818 0.75 0.172213
Target:  5'- cGCCGGCGCCGCgGcCAGUuGC-GCGUCc -3'
miRNA:   3'- -CGGCCGUGGCGgU-GUCAcCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 85324 0.74 0.180799
Target:  5'- cGCgGGCGcucucgccccgcCCGCCGCGaacgccgacgccGUGGCGGCGUUc -3'
miRNA:   3'- -CGgCCGU------------GGCGGUGU------------CACCGCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.