miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 113666 1.11 0.000415
Target:  5'- cGCCGGCACCGCCACAGUGGCGGCGUCg -3'
miRNA:   3'- -CGGCCGUGGCGGUGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 58239 0.7 0.330248
Target:  5'- cGUCGGCccccAUCGCCGCAGaaaaUGGCGcucGUGUCa -3'
miRNA:   3'- -CGGCCG----UGGCGGUGUC----ACCGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 69257 0.7 0.352395
Target:  5'- cGCUGG-GCCGCgGCucgagccGUGGCGGCGg- -3'
miRNA:   3'- -CGGCCgUGGCGgUGu------CACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 92537 0.66 0.582427
Target:  5'- cGCCGGCACggugugcagCGCgCACuuGGUGuCGGCGg- -3'
miRNA:   3'- -CGGCCGUG---------GCG-GUG--UCACcGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 121441 0.75 0.152322
Target:  5'- aGCgGGUGCCgcGCCACGGcgcGGCGGCGUUc -3'
miRNA:   3'- -CGgCCGUGG--CGGUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 66127 0.75 0.152322
Target:  5'- aGgCGGCGCCGCCcgcggaACAGUGGUcggccGGCGUg -3'
miRNA:   3'- -CgGCCGUGGCGG------UGUCACCG-----CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 2668 0.74 0.189763
Target:  5'- cGCCGGCGgCGCCugGGgcaacuGCGGCGcCu -3'
miRNA:   3'- -CGGCCGUgGCGGugUCac----CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 20772 0.74 0.191602
Target:  5'- cGCCGGCgucguccacguagaaGCCGUCgacgcGCAGUGcGCGGgCGUCg -3'
miRNA:   3'- -CGGCCG---------------UGGCGG-----UGUCAC-CGCC-GCAG- -5'
6743 3' -62.9 NC_001875.2 + 28823 0.72 0.246281
Target:  5'- aGCCGGUgACCGUCAgGGUGGCcgacacggacGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCGGUgUCACCG----------CCGCag -5'
6743 3' -62.9 NC_001875.2 + 83455 0.71 0.316063
Target:  5'- aGCCGGCACCugucGCCGCGucGgacgGGCGcGCGa- -3'
miRNA:   3'- -CGGCCGUGG----CGGUGU--Ca---CCGC-CGCag -5'
6743 3' -62.9 NC_001875.2 + 3181 0.72 0.270061
Target:  5'- aGCCGGCgGCCGCgCACcagagacaGGUugcGGCGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCG-GUG--------UCA---CCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 91732 0.73 0.229606
Target:  5'- cGUCGGCAaguacagCGCCAgcCAGUGGCG-CGUCa -3'
miRNA:   3'- -CGGCCGUg------GCGGU--GUCACCGCcGCAG- -5'
6743 3' -62.9 NC_001875.2 + 39625 0.8 0.074959
Target:  5'- gGCCGGCcCCGgCagucgACGGUGGCGGCGUUu -3'
miRNA:   3'- -CGGCCGuGGCgG-----UGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 61606 0.71 0.282629
Target:  5'- cGCCGGCGgCGCUuCGGgcugugucGGCGGCGcCu -3'
miRNA:   3'- -CGGCCGUgGCGGuGUCa-------CCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 94730 0.77 0.124493
Target:  5'- cGCCGGCGCggCGCCGCGcccgcacacccacGcGGCGGUGUCg -3'
miRNA:   3'- -CGGCCGUG--GCGGUGU-------------CaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 124744 0.73 0.226388
Target:  5'- uGUCGGCAgcgcgcgcugcauguCUGCgCACAGgccGGUGGCGUCg -3'
miRNA:   3'- -CGGCCGU---------------GGCG-GUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 76472 0.71 0.295655
Target:  5'- cGCCGGCaaaACgGCCGCGGacgacgacgaGGCGGCGcCc -3'
miRNA:   3'- -CGGCCG---UGgCGGUGUCa---------CCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 33874 0.7 0.337515
Target:  5'- gGCCGGCAgaaCGgCGuuuCGGUGGCcGCGUCg -3'
miRNA:   3'- -CGGCCGUg--GCgGU---GUCACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 109117 0.77 0.124806
Target:  5'- gGCCGGCGCacaaguagGCCACAGUGGCGaCGa- -3'
miRNA:   3'- -CGGCCGUGg-------CGGUGUCACCGCcGCag -5'
6743 3' -62.9 NC_001875.2 + 112714 0.74 0.185233
Target:  5'- -aCGGCGCCGCCGUGGUaGGCG-CGUCg -3'
miRNA:   3'- cgGCCGUGGCGGUGUCA-CCGCcGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.