miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 113666 1.11 0.000415
Target:  5'- cGCCGGCACCGCCACAGUGGCGGCGUCg -3'
miRNA:   3'- -CGGCCGUGGCGGUGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 39625 0.8 0.074959
Target:  5'- gGCCGGCcCCGgCagucgACGGUGGCGGCGUUu -3'
miRNA:   3'- -CGGCCGuGGCgG-----UGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 10634 0.79 0.087473
Target:  5'- gGCCGGUGCCGCCcagcguGCAGUacuugGGCGGCGg- -3'
miRNA:   3'- -CGGCCGUGGCGG------UGUCA-----CCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 37585 0.78 0.099397
Target:  5'- cGCCGGCGCgagCGCCGCGGccggccgcacGGCGGCGUg -3'
miRNA:   3'- -CGGCCGUG---GCGGUGUCa---------CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 68548 0.78 0.099397
Target:  5'- -gCGGUuuGCCGCCGCGGcGGCGGCGgUCg -3'
miRNA:   3'- cgGCCG--UGGCGGUGUCaCCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 99277 0.78 0.099397
Target:  5'- cGCgCGGCACUGCUGCAGccgcuccucGGCGGCGUUg -3'
miRNA:   3'- -CG-GCCGUGGCGGUGUCa--------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 18168 0.77 0.115729
Target:  5'- cGCgCGaCGCCGCCACuGUGGCGGUGcCg -3'
miRNA:   3'- -CG-GCcGUGGCGGUGuCACCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 94730 0.77 0.124493
Target:  5'- cGCCGGCGCggCGCCGCGcccgcacacccacGcGGCGGUGUCg -3'
miRNA:   3'- -CGGCCGUG--GCGGUGU-------------CaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 109117 0.77 0.124806
Target:  5'- gGCCGGCGCacaaguagGCCACAGUGGCGaCGa- -3'
miRNA:   3'- -CGGCCGUGg-------CGGUGUCACCGCcGCag -5'
6743 3' -62.9 NC_001875.2 + 56888 0.76 0.134203
Target:  5'- aGCCGGCaggucguACCGCCGCAGcaGCGGCuuGUCg -3'
miRNA:   3'- -CGGCCG-------UGGCGGUGUCacCGCCG--CAG- -5'
6743 3' -62.9 NC_001875.2 + 66127 0.75 0.152322
Target:  5'- aGgCGGCGCCGCCcgcggaACAGUGGUcggccGGCGUg -3'
miRNA:   3'- -CgGCCGUGGCGG------UGUCACCG-----CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 121441 0.75 0.152322
Target:  5'- aGCgGGUGCCgcGCCACGGcgcGGCGGCGUUc -3'
miRNA:   3'- -CGgCCGUGG--CGGUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 84363 0.75 0.160015
Target:  5'- cGCCGGUaggugcGCgGCCugcCGG-GGCGGCGUCg -3'
miRNA:   3'- -CGGCCG------UGgCGGu--GUCaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 41818 0.75 0.172213
Target:  5'- cGCCGGCGCCGCgGcCAGUuGC-GCGUCc -3'
miRNA:   3'- -CGGCCGUGGCGgU-GUCAcCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 85324 0.74 0.180799
Target:  5'- cGCgGGCGcucucgccccgcCCGCCGCGaacgccgacgccGUGGCGGCGUUc -3'
miRNA:   3'- -CGgCCGU------------GGCGGUGU------------CACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 112714 0.74 0.185233
Target:  5'- -aCGGCGCCGCCGUGGUaGGCG-CGUCg -3'
miRNA:   3'- cgGCCGUGGCGGUGUCA-CCGCcGCAG- -5'
6743 3' -62.9 NC_001875.2 + 2668 0.74 0.189763
Target:  5'- cGCCGGCGgCGCCugGGgcaacuGCGGCGcCu -3'
miRNA:   3'- -CGGCCGUgGCGGugUCac----CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 20772 0.74 0.191602
Target:  5'- cGCCGGCgucguccacguagaaGCCGUCgacgcGCAGUGcGCGGgCGUCg -3'
miRNA:   3'- -CGGCCG---------------UGGCGG-----UGUCAC-CGCC-GCAG- -5'
6743 3' -62.9 NC_001875.2 + 54757 0.74 0.203453
Target:  5'- cGCCGGCACCGCCagcgcaaACAG-GaCGGCG-Ca -3'
miRNA:   3'- -CGGCCGUGGCGG-------UGUCaCcGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 10932 0.74 0.20394
Target:  5'- cGCgGuGUugCGCCACAaaaacGUGGUGGCGUUu -3'
miRNA:   3'- -CGgC-CGugGCGGUGU-----CACCGCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.