miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 130913 0.66 0.562918
Target:  5'- aGCCGuC-CgGUCacgGCAGUGGCGGCGg- -3'
miRNA:   3'- -CGGCcGuGgCGG---UGUCACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 130072 0.68 0.436979
Target:  5'- cGgCGGCAugcucguggucacauCCGCCgACGGaaaUGGCGGCGg- -3'
miRNA:   3'- -CgGCCGU---------------GGCGG-UGUC---ACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 130024 0.68 0.436979
Target:  5'- cGgCGGCAugcucguggucacauCCGCCgACGGaaaUGGCGGCGg- -3'
miRNA:   3'- -CgGCCGU---------------GGCGG-UGUC---ACCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 129964 0.67 0.487086
Target:  5'- uGgCGGCgGCgGCgGCGGcGGCGGCGg- -3'
miRNA:   3'- -CgGCCG-UGgCGgUGUCaCCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 127057 0.67 0.496322
Target:  5'- cGCCGGCugUaauagucaaaGCCGCGGccaacGGCGGCc-- -3'
miRNA:   3'- -CGGCCGugG----------CGGUGUCa----CCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 124744 0.73 0.226388
Target:  5'- uGUCGGCAgcgcgcgcugcauguCUGCgCACAGgccGGUGGCGUCg -3'
miRNA:   3'- -CGGCCGU---------------GGCG-GUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 121441 0.75 0.152322
Target:  5'- aGCgGGUGCCgcGCCACGGcgcGGCGGCGUUc -3'
miRNA:   3'- -CGgCCGUGG--CGGUGUCa--CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 119008 0.66 0.55613
Target:  5'- aGCCGGCGCCGCCGgguuuguguucgaAGacgccuacguagacUGGUccGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGGUg------------UC--------------ACCG--CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 118021 0.67 0.505635
Target:  5'- uCCGGUACCGCgAcCAGUGcGaCGGCa-- -3'
miRNA:   3'- cGGCCGUGGCGgU-GUCAC-C-GCCGcag -5'
6743 3' -62.9 NC_001875.2 + 117199 0.66 0.560006
Target:  5'- gGCCGGCACCucgucgaagcgaaaGCCguACucgGGCGGCa-- -3'
miRNA:   3'- -CGGCCGUGG--------------CGG--UGucaCCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 116201 0.66 0.543589
Target:  5'- cGUCuGCACCGCCuCAG-GGUGGaaguacagguCGUCg -3'
miRNA:   3'- -CGGcCGUGGCGGuGUCaCCGCC----------GCAG- -5'
6743 3' -62.9 NC_001875.2 + 114517 0.66 0.532095
Target:  5'- cGgCGGCgcaACCGCCAgCAGcucuuuaacaucGGCGGCGcUCa -3'
miRNA:   3'- -CgGCCG---UGGCGGU-GUCa-----------CCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 113666 1.11 0.000415
Target:  5'- cGCCGGCACCGCCACAGUGGCGGCGUCg -3'
miRNA:   3'- -CGGCCGUGGCGGUGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 113609 0.66 0.582427
Target:  5'- aGUCGGCggcggGCCGCgGCGGcaaGaGCGGCGa- -3'
miRNA:   3'- -CGGCCG-----UGGCGgUGUCa--C-CGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 113355 0.66 0.553228
Target:  5'- gGCgCGGCugCGUCGCuGcgGcGCGGCG-Ca -3'
miRNA:   3'- -CG-GCCGugGCGGUGuCa-C-CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 113094 0.67 0.487086
Target:  5'- cGUCaGCGCCuuaGCCGCcGUGGUGaGCGUUu -3'
miRNA:   3'- -CGGcCGUGG---CGGUGuCACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 112714 0.74 0.185233
Target:  5'- -aCGGCGCCGCCGUGGUaGGCG-CGUCg -3'
miRNA:   3'- cgGCCGUGGCGGUGUCA-CCGCcGCAG- -5'
6743 3' -62.9 NC_001875.2 + 112407 0.68 0.450999
Target:  5'- -gCGGCGCgGCCGCAGcacaauGCGGUaGUCg -3'
miRNA:   3'- cgGCCGUGgCGGUGUCac----CGCCG-CAG- -5'
6743 3' -62.9 NC_001875.2 + 111086 0.7 0.344897
Target:  5'- cGCCGGCGCCGUgAaaaccuuuuGUuGCGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCGgUgu-------CAcCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 110150 0.7 0.360007
Target:  5'- aCCGcaGCACCGCguCGCGcucgucgGGCGGCGUCg -3'
miRNA:   3'- cGGC--CGUGGCG--GUGUca-----CCGCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.