miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 26230 0.7 0.337515
Target:  5'- gGCCGcGUACCGggGCA-UGGCGGCGUa -3'
miRNA:   3'- -CGGC-CGUGGCggUGUcACCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 28823 0.72 0.246281
Target:  5'- aGCCGGUgACCGUCAgGGUGGCcgacacggacGGCGg- -3'
miRNA:   3'- -CGGCCG-UGGCGGUgUCACCG----------CCGCag -5'
6743 3' -62.9 NC_001875.2 + 31960 0.68 0.442207
Target:  5'- uGCCGGCGaCGacgaaCGCGuGUGGCGcGCGUa -3'
miRNA:   3'- -CGGCCGUgGCg----GUGU-CACCGC-CGCAg -5'
6743 3' -62.9 NC_001875.2 + 32455 0.72 0.246281
Target:  5'- cGCUGGCGCCGCC--GGU-GCGGCGc- -3'
miRNA:   3'- -CGGCCGUGGCGGugUCAcCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 33235 0.66 0.582427
Target:  5'- cGCCgGGCGCCGUUuCGGc-GCGGCGcUCc -3'
miRNA:   3'- -CGG-CCGUGGCGGuGUCacCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 33874 0.7 0.337515
Target:  5'- gGCCGGCAgaaCGgCGuuuCGGUGGCcGCGUCg -3'
miRNA:   3'- -CGGCCGUg--GCgGU---GUCACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 33943 0.67 0.505635
Target:  5'- cGUCGGCGCCGacgcCCGCAacGUGcccguGCGGCG-Cg -3'
miRNA:   3'- -CGGCCGUGGC----GGUGU--CAC-----CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 35073 0.67 0.515024
Target:  5'- uGCUGGUuuGCgGCCGCAucGaCGGCGUCa -3'
miRNA:   3'- -CGGCCG--UGgCGGUGUcaCcGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 36098 0.66 0.562918
Target:  5'- cGCgCGGCA--GCaCGCGGcGGCGGCGcCg -3'
miRNA:   3'- -CG-GCCGUggCG-GUGUCaCCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 37112 0.68 0.433513
Target:  5'- uGCgGGCGCggCGCCGCGccGGCGuuuGCGUCu -3'
miRNA:   3'- -CGgCCGUG--GCGGUGUcaCCGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 37585 0.78 0.099397
Target:  5'- cGCCGGCGCgagCGCCGCGGccggccgcacGGCGGCGUg -3'
miRNA:   3'- -CGGCCGUG---GCGGUGUCa---------CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 39047 0.66 0.579491
Target:  5'- cGgCGGCGCUGuaCCGCAagcgcauggccauuGUGcgccGCGGCGUCg -3'
miRNA:   3'- -CgGCCGUGGC--GGUGU--------------CAC----CGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 39292 0.67 0.505635
Target:  5'- cGCCGacaccaagugcGCGCUGCaCACcGUgccGGCGGCGUg -3'
miRNA:   3'- -CGGC-----------CGUGGCG-GUGuCA---CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 39625 0.8 0.074959
Target:  5'- gGCCGGCcCCGgCagucgACGGUGGCGGCGUUu -3'
miRNA:   3'- -CGGCCGuGGCgG-----UGUCACCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 40149 0.68 0.445712
Target:  5'- gGCUGGCACCG-CACGGccGGCaacgcgaugcgcaugGGCGUg -3'
miRNA:   3'- -CGGCCGUGGCgGUGUCa-CCG---------------CCGCAg -5'
6743 3' -62.9 NC_001875.2 + 41459 0.68 0.424919
Target:  5'- cGCCGGUugCGgCGCGc--GCGGCGUg -3'
miRNA:   3'- -CGGCCGugGCgGUGUcacCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 41498 0.67 0.508444
Target:  5'- cGCCGGCcgguCgGCCAauuugcaucguuugGGCGGCGUUg -3'
miRNA:   3'- -CGGCCGu---GgCGGUguca----------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 41818 0.75 0.172213
Target:  5'- cGCCGGCGCCGCgGcCAGUuGC-GCGUCc -3'
miRNA:   3'- -CGGCCGUGGCGgU-GUCAcCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 42741 0.68 0.433513
Target:  5'- cGCgCGGCGaCGCgCAUGGUGaGCGGCG-Cg -3'
miRNA:   3'- -CG-GCCGUgGCG-GUGUCAC-CGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 42907 0.69 0.366179
Target:  5'- gGCUGuGCGCCGCaugccgugggcguCGCAgucaaacGUGGCGuGCGUCa -3'
miRNA:   3'- -CGGC-CGUGGCG-------------GUGU-------CACCGC-CGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.