miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 3' -52.8 NC_001875.2 + 45111 0.66 0.959165
Target:  5'- -cGCGCCUUcaugUGCgacgaGCAGUGuCgGCCg -3'
miRNA:   3'- gaCGCGGAA----ACGaa---CGUUAU-GgCGGa -5'
6744 3' -52.8 NC_001875.2 + 77675 0.66 0.959165
Target:  5'- -aGCGCCgcUGUccgagcgcguauUUGCGcgACUGCCg -3'
miRNA:   3'- gaCGCGGaaACG------------AACGUuaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 17307 0.66 0.95801
Target:  5'- -aGCGCCgccgauguuaaagaGCUgcugGCGGUugCGCCg -3'
miRNA:   3'- gaCGCGGaaa-----------CGAa---CGUUAugGCGGa -5'
6744 3' -52.8 NC_001875.2 + 31316 0.66 0.955227
Target:  5'- cCUGuCGCUg--GCggUGCAAcaaaaauuUGCCGCCg -3'
miRNA:   3'- -GAC-GCGGaaaCGa-ACGUU--------AUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 34807 0.66 0.955227
Target:  5'- gUGCGCCg--GCaaGCGuuuacgacgcUGCCGCCg -3'
miRNA:   3'- gACGCGGaaaCGaaCGUu---------AUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 99436 0.66 0.955227
Target:  5'- uUGCGCCgucGCccacaacuuUUGCGucGCCGCCc -3'
miRNA:   3'- gACGCGGaaaCG---------AACGUuaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 5054 0.66 0.955227
Target:  5'- -aGcCGCCgcaGCUUGCAcaGCCGCa- -3'
miRNA:   3'- gaC-GCGGaaaCGAACGUuaUGGCGga -5'
6744 3' -52.8 NC_001875.2 + 77264 0.66 0.955227
Target:  5'- -cGCGCCgccggGCgaaGCG--GCCGCCg -3'
miRNA:   3'- gaCGCGGaaa--CGaa-CGUuaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 4989 0.66 0.951039
Target:  5'- -aGCGCCUcgcUGCUgugcggcacuugUGCAcuuugcGCCGCCUc -3'
miRNA:   3'- gaCGCGGAa--ACGA------------ACGUua----UGGCGGA- -5'
6744 3' -52.8 NC_001875.2 + 115181 0.66 0.951039
Target:  5'- -cGUGCCcgaccGCgUGCAAUACCGUUUg -3'
miRNA:   3'- gaCGCGGaaa--CGaACGUUAUGGCGGA- -5'
6744 3' -52.8 NC_001875.2 + 67138 0.66 0.946598
Target:  5'- -aGCGCCgugUUGC-UGCG--GCUGUCUg -3'
miRNA:   3'- gaCGCGGa--AACGaACGUuaUGGCGGA- -5'
6744 3' -52.8 NC_001875.2 + 110775 0.66 0.941898
Target:  5'- -cGCGCUUUUGCccaaAAcGCCGCCg -3'
miRNA:   3'- gaCGCGGAAACGaacgUUaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 91682 0.67 0.936939
Target:  5'- aUGCGCaucgcgUUGCcggccgUGCGGUGCCaGCCc -3'
miRNA:   3'- gACGCGga----AACGa-----ACGUUAUGG-CGGa -5'
6744 3' -52.8 NC_001875.2 + 12161 0.67 0.936939
Target:  5'- -aGCGCUUUcgGCUgaagccgcugUGCGccGCCGCCg -3'
miRNA:   3'- gaCGCGGAAa-CGA----------ACGUuaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 97281 0.67 0.936939
Target:  5'- -gGCGCCUUUGCacGCcaAAUACgGCg- -3'
miRNA:   3'- gaCGCGGAAACGaaCG--UUAUGgCGga -5'
6744 3' -52.8 NC_001875.2 + 118804 0.67 0.936429
Target:  5'- -aGCGCUuaUUUGCgcgcuuuUUGCAAaGCUGCCg -3'
miRNA:   3'- gaCGCGG--AAACG-------AACGUUaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 18698 0.67 0.936429
Target:  5'- -cGCGCCg--GCgUGCAcauuaacGUGCCGCa- -3'
miRNA:   3'- gaCGCGGaaaCGaACGU-------UAUGGCGga -5'
6744 3' -52.8 NC_001875.2 + 85602 0.67 0.931717
Target:  5'- -aGCGCCUccaccaacgcGCUUGUGAUaucguucgcagcGCCGCCa -3'
miRNA:   3'- gaCGCGGAaa--------CGAACGUUA------------UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 21355 0.67 0.926233
Target:  5'- -aGCGCCgugUGCUUgacGCGGUACUugcgguugGCCUu -3'
miRNA:   3'- gaCGCGGaa-ACGAA---CGUUAUGG--------CGGA- -5'
6744 3' -52.8 NC_001875.2 + 31675 0.67 0.920484
Target:  5'- aCUGgGCCagcgUGCcgGCGuggACCGCCg -3'
miRNA:   3'- -GACgCGGaa--ACGaaCGUua-UGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.