miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 3' -52.8 NC_001875.2 + 121174 0.74 0.565889
Target:  5'- -aGCGCCUgcGCcaagUGCAGUccGCCGCCc -3'
miRNA:   3'- gaCGCGGAaaCGa---ACGUUA--UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 118804 0.67 0.936429
Target:  5'- -aGCGCUuaUUUGCgcgcuuuUUGCAAaGCUGCCg -3'
miRNA:   3'- gaCGCGG--AAACG-------AACGUUaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 4989 0.66 0.951039
Target:  5'- -aGCGCCUcgcUGCUgugcggcacuugUGCAcuuugcGCCGCCUc -3'
miRNA:   3'- gaCGCGGAa--ACGA------------ACGUua----UGGCGGA- -5'
6744 3' -52.8 NC_001875.2 + 45111 0.66 0.959165
Target:  5'- -cGCGCCUUcaugUGCgacgaGCAGUGuCgGCCg -3'
miRNA:   3'- gaCGCGGAA----ACGaa---CGUUAU-GgCGGa -5'
6744 3' -52.8 NC_001875.2 + 63273 0.71 0.76625
Target:  5'- -gGCGCCac-GCggUGCGcgACCGCCg -3'
miRNA:   3'- gaCGCGGaaaCGa-ACGUuaUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 62012 0.69 0.865237
Target:  5'- uUGCGCaaaaUUGCUUGUAAU-CCGCg- -3'
miRNA:   3'- gACGCGga--AACGAACGUUAuGGCGga -5'
6744 3' -52.8 NC_001875.2 + 79107 0.68 0.887835
Target:  5'- -cGCGCaaaUGCUgGCGAU-CCGCCg -3'
miRNA:   3'- gaCGCGgaaACGAaCGUUAuGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 119874 0.68 0.894877
Target:  5'- -cGuCGCCagUGCUucUGCAAcgcGCCGCCg -3'
miRNA:   3'- gaC-GCGGaaACGA--ACGUUa--UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 9083 0.67 0.908199
Target:  5'- aCUGCGCCUgugGCgagucgGCGcUAaaccCCGCCa -3'
miRNA:   3'- -GACGCGGAaa-CGaa----CGUuAU----GGCGGa -5'
6744 3' -52.8 NC_001875.2 + 85602 0.67 0.931717
Target:  5'- -aGCGCCUccaccaacgcGCUUGUGAUaucguucgcagcGCCGCCa -3'
miRNA:   3'- gaCGCGGAaa--------CGAACGUUA------------UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 11040 0.67 0.914472
Target:  5'- gCUGCGCCguuugcGCUUGUugGAUACCaGCg- -3'
miRNA:   3'- -GACGCGGaaa---CGAACG--UUAUGG-CGga -5'
6744 3' -52.8 NC_001875.2 + 75497 0.68 0.901667
Target:  5'- -cGCGCCUgcgucGCagGCGcAUACCGCUg -3'
miRNA:   3'- gaCGCGGAaa---CGaaCGU-UAUGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 92513 0.72 0.715211
Target:  5'- gCUGCGCCUgcaGCgcGCGcacGCCGCCg -3'
miRNA:   3'- -GACGCGGAaa-CGaaCGUua-UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 87393 0.67 0.914472
Target:  5'- aCUGCGCCgacggcgccUUGCUgaucGCGuucaacgACCGCCc -3'
miRNA:   3'- -GACGCGGa--------AACGAa---CGUua-----UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 72681 0.71 0.76625
Target:  5'- uCUGUGCCaucaccagguUUUGCUccGCGGUGCgCGCCg -3'
miRNA:   3'- -GACGCGG----------AAACGAa-CGUUAUG-GCGGa -5'
6744 3' -52.8 NC_001875.2 + 114721 0.68 0.894877
Target:  5'- -cGaCGCCaaaUGCUUGCuuaugcgGCCGCCa -3'
miRNA:   3'- gaC-GCGGaa-ACGAACGuua----UGGCGGa -5'
6744 3' -52.8 NC_001875.2 + 21355 0.67 0.926233
Target:  5'- -aGCGCCgugUGCUUgacGCGGUACUugcgguugGCCUu -3'
miRNA:   3'- gaCGCGGaa-ACGAA---CGUUAUGG--------CGGA- -5'
6744 3' -52.8 NC_001875.2 + 91682 0.67 0.936939
Target:  5'- aUGCGCaucgcgUUGCcggccgUGCGGUGCCaGCCc -3'
miRNA:   3'- gACGCGga----AACGa-----ACGUUAUGG-CGGa -5'
6744 3' -52.8 NC_001875.2 + 77075 0.71 0.76625
Target:  5'- uUGCGCCguccugUUUGCgcugGCGGUGCCGgCg -3'
miRNA:   3'- gACGCGG------AAACGaa--CGUUAUGGCgGa -5'
6744 3' -52.8 NC_001875.2 + 86928 0.68 0.87301
Target:  5'- -aGCGCCgccuagagUGCgaggGCGA-GCCGCCa -3'
miRNA:   3'- gaCGCGGaa------ACGaa--CGUUaUGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.