miRNA display CGI


Results 41 - 60 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 32002 0.66 0.892375
Target:  5'- uGUGaGCGgCGGCGACGCA--GCGCa- -3'
miRNA:   3'- -UAUcCGCgGUUGCUGCGUuuCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 62417 0.66 0.892375
Target:  5'- --cGGCGUCAagcacuucGCGugGaaauuGCGCGCc -3'
miRNA:   3'- uauCCGCGGU--------UGCugCguuu-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 74102 0.66 0.892375
Target:  5'- uUGGGC---AGCGACGCcgugcuGGCGCGUg -3'
miRNA:   3'- uAUCCGcggUUGCUGCGuu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 93584 0.66 0.892375
Target:  5'- -gAGGCGCUcuuuagcuCGuuGUAGAcGCGCGCu -3'
miRNA:   3'- uaUCCGCGGuu------GCugCGUUU-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 52512 0.66 0.892375
Target:  5'- --cGGCGCCAAaGGCaGCGccGCGCu- -3'
miRNA:   3'- uauCCGCGGUUgCUG-CGUuuCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 98609 0.66 0.892375
Target:  5'- ---cGCGCCGaaACGGCGCccggcGAGCccGCGCc -3'
miRNA:   3'- uaucCGCGGU--UGCUGCGu----UUCG--CGCG- -5'
6744 5' -55.3 NC_001875.2 + 119675 0.66 0.892375
Target:  5'- --cGGCGCaCAGCGGCuucaGCcgAAAGCGCu- -3'
miRNA:   3'- uauCCGCG-GUUGCUG----CG--UUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 104846 0.66 0.892375
Target:  5'- --cGGCGgcaacaaccUCAACGugGCcGAGCGCa- -3'
miRNA:   3'- uauCCGC---------GGUUGCugCGuUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 127916 0.66 0.892375
Target:  5'- -aAGcGgGCCGACGACaagGCAAGGaaaaagaaaUGCGCg -3'
miRNA:   3'- uaUC-CgCGGUUGCUG---CGUUUC---------GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127053 0.66 0.892375
Target:  5'- -aGGGCGCCGGCuguaauaGuCAAAGC-CGCg -3'
miRNA:   3'- uaUCCGCGGUUGcug----C-GUUUCGcGCG- -5'
6744 5' -55.3 NC_001875.2 + 95116 0.66 0.88542
Target:  5'- --cGaGCGCCuaacCGuuGUGGAGCGCGCc -3'
miRNA:   3'- uauC-CGCGGuu--GCugCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 85824 0.66 0.88542
Target:  5'- --cGGCGCCAGCuGCGUG-GGCG-GCc -3'
miRNA:   3'- uauCCGCGGUUGcUGCGUuUCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 84991 0.66 0.88542
Target:  5'- gGUGGGCauuuCCAgcaGCGuGCGCAAcGUGUGCa -3'
miRNA:   3'- -UAUCCGc---GGU---UGC-UGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 81007 0.66 0.88542
Target:  5'- -aAGGCGC--GCGACGCGuuGC-UGCc -3'
miRNA:   3'- uaUCCGCGguUGCUGCGUuuCGcGCG- -5'
6744 5' -55.3 NC_001875.2 + 50118 0.66 0.88542
Target:  5'- -cGGGCGCaauaauaAACaGuCGCucGGUGCGCg -3'
miRNA:   3'- uaUCCGCGg------UUG-CuGCGuuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6191 0.66 0.88542
Target:  5'- ---uGUGCCcGCG-CGCcguuucAAAGCGCGCa -3'
miRNA:   3'- uaucCGCGGuUGCuGCG------UUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 101306 0.66 0.88542
Target:  5'- -aGGGuCGCCGcUGACGCAccGCuaaaaauagcacGCGCu -3'
miRNA:   3'- uaUCC-GCGGUuGCUGCGUuuCG------------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 48331 0.66 0.88542
Target:  5'- uUGGGCGUCGAaccCGcacaaggaccaGCGUuacAGCGCGCu -3'
miRNA:   3'- uAUCCGCGGUU---GC-----------UGCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 110006 0.66 0.88542
Target:  5'- --uGGCGUUGACGcgcGCGCAGcucgaccaguGGCGCGa -3'
miRNA:   3'- uauCCGCGGUUGC---UGCGUU----------UCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 5302 0.66 0.88542
Target:  5'- ---cGCGcCCGACGACcacucCAuuGCGCGCu -3'
miRNA:   3'- uaucCGC-GGUUGCUGc----GUuuCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.