miRNA display CGI


Results 21 - 40 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 89770 0.66 0.89909
Target:  5'- --uGGUgGUCGGCGACGCGcucgugcacGUGCGCg -3'
miRNA:   3'- uauCCG-CGGUUGCUGCGUuu-------CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 14812 0.66 0.89909
Target:  5'- -aGGaGCGCCAGC-AUGgucAGCGCGCc -3'
miRNA:   3'- uaUC-CGCGGUUGcUGCguuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 69154 0.66 0.89909
Target:  5'- ---uGCcUCAACGAuCGCGAGGCGCaGCu -3'
miRNA:   3'- uaucCGcGGUUGCU-GCGUUUCGCG-CG- -5'
6744 5' -55.3 NC_001875.2 + 83580 0.66 0.89909
Target:  5'- --uGGCGaacaAugGACGCc--GCGCGCc -3'
miRNA:   3'- uauCCGCgg--UugCUGCGuuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 95433 0.66 0.89909
Target:  5'- --cGGCGCCGGCca-GCGu-GCGCGg -3'
miRNA:   3'- uauCCGCGGUUGcugCGUuuCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 62604 0.66 0.89843
Target:  5'- -cAGcGCGCCGuucgACGccgccguguccgaAUGCAAGGUGUGCu -3'
miRNA:   3'- uaUC-CGCGGU----UGC-------------UGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 9709 0.66 0.89843
Target:  5'- cGUGcGCGCCGGCcGCGCcgcgcccGAAGCGUGg -3'
miRNA:   3'- -UAUcCGCGGUUGcUGCG-------UUUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 31731 0.66 0.89843
Target:  5'- --cGGCgaaguugGCCcGCGGCGUuuGAGCGCGa -3'
miRNA:   3'- uauCCG-------CGGuUGCUGCGu-UUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 85214 0.66 0.897767
Target:  5'- -cGGGcCGCCGcgcgguaGCGcCGCAugucgacGAGCGCGg -3'
miRNA:   3'- uaUCC-GCGGU-------UGCuGCGU-------UUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 89181 0.66 0.897767
Target:  5'- --uGGCGCaaaucagccuCGACGCGgaccggcuGGGCGUGCc -3'
miRNA:   3'- uauCCGCGguu-------GCUGCGU--------UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 84502 0.66 0.897101
Target:  5'- uUAGGUcauuggccgccGCCGACaGcACGUgcgucaucuuugaaGAAGCGCGCa -3'
miRNA:   3'- uAUCCG-----------CGGUUG-C-UGCG--------------UUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127329 0.66 0.897101
Target:  5'- -cGGuGCGCCGcuuuccgcagcggaGCaGACGCAAcGUGUGCc -3'
miRNA:   3'- uaUC-CGCGGU--------------UG-CUGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 28367 0.66 0.896433
Target:  5'- --uGGCGCCuuuaaaaggucguACGuCGC--GGCGUGCa -3'
miRNA:   3'- uauCCGCGGu------------UGCuGCGuuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 62106 0.66 0.89509
Target:  5'- -cAGGuCGCCGcccgauuccgugcaaACGuuaGCGCGAcGCGCGUc -3'
miRNA:   3'- uaUCC-GCGGU---------------UGC---UGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 13025 0.66 0.892375
Target:  5'- ---cGCGgCAGCuuUGCAaaAAGCGCGCa -3'
miRNA:   3'- uaucCGCgGUUGcuGCGU--UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 119675 0.66 0.892375
Target:  5'- --cGGCGCaCAGCGGCuucaGCcgAAAGCGCu- -3'
miRNA:   3'- uauCCGCG-GUUGCUG----CG--UUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 120973 0.66 0.892375
Target:  5'- ---aGCGCCAcCGACGCGGccacCGCGUc -3'
miRNA:   3'- uaucCGCGGUuGCUGCGUUuc--GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 127916 0.66 0.892375
Target:  5'- -aAGcGgGCCGACGACaagGCAAGGaaaaagaaaUGCGCg -3'
miRNA:   3'- uaUC-CgCGGUUGCUG---CGUUUC---------GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 124883 0.66 0.892375
Target:  5'- -cAGcGCGCCGugGCGAUGuCGcGGCGCacGCa -3'
miRNA:   3'- uaUC-CGCGGU--UGCUGC-GUuUCGCG--CG- -5'
6744 5' -55.3 NC_001875.2 + 98609 0.66 0.892375
Target:  5'- ---cGCGCCGaaACGGCGCccggcGAGCccGCGCc -3'
miRNA:   3'- uaucCGCGGU--UGCUGCGu----UUCG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.