miRNA display CGI


Results 21 - 40 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 3061 0.78 0.2707
Target:  5'- -gAGGCGCgCAGCGGCGCGccggggucgcccacGGCGUGCa -3'
miRNA:   3'- uaUCCGCG-GUUGCUGCGUu-------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 81980 0.78 0.274659
Target:  5'- --uGGCGCCGGCaaGGCGCGccggccGGCGCGCa -3'
miRNA:   3'- uauCCGCGGUUG--CUGCGUu-----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 124187 0.78 0.274659
Target:  5'- ---cGUGCCGugGAUGUAGAGCGCGUc -3'
miRNA:   3'- uaucCGCGGUugCUGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 100901 0.78 0.274659
Target:  5'- -cGGGCGCCGcaGCG-CGCGGAGaCGCGUc -3'
miRNA:   3'- uaUCCGCGGU--UGCuGCGUUUC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 86946 0.78 0.284076
Target:  5'- -aGGGCgagccGCCAGCGuccaagcggcgcaaaGCGCAAAGCGUGCu -3'
miRNA:   3'- uaUCCG-----CGGUUGC---------------UGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 88226 0.78 0.28819
Target:  5'- uUGGGCaaaAACGGCGCAAgcGGCGCGCg -3'
miRNA:   3'- uAUCCGcggUUGCUGCGUU--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 21973 0.78 0.28819
Target:  5'- --cGGCGCCAGCGccaGCuugGCAAAcGCGCGCa -3'
miRNA:   3'- uauCCGCGGUUGC---UG---CGUUU-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 76865 0.78 0.294448
Target:  5'- -aAGGCGCCcagcgcgAGCGACGCGuccggcaaacGCGCGCg -3'
miRNA:   3'- uaUCCGCGG-------UUGCUGCGUuu--------CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 54989 0.78 0.294448
Target:  5'- cUGGGCGCCuuucguuuCGugGCGAuuuugaccagcgcGGCGCGCu -3'
miRNA:   3'- uAUCCGCGGuu------GCugCGUU-------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 68625 0.78 0.295149
Target:  5'- -cGGGCgacGCgGGCGACGUAAAGCuGCGCu -3'
miRNA:   3'- uaUCCG---CGgUUGCUGCGUUUCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 40222 0.77 0.302239
Target:  5'- --uGGCGCCGGCGaaacGCGCGuguuuAGCGUGCu -3'
miRNA:   3'- uauCCGCGGUUGC----UGCGUu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 116927 0.77 0.302239
Target:  5'- --uGGCGCaCAAUGACGUAGAGCauccacacGCGCg -3'
miRNA:   3'- uauCCGCG-GUUGCUGCGUUUCG--------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 2665 0.77 0.308732
Target:  5'- --cGGCGCCGGCGGCGCcuGGGGCaacugcgGCGCc -3'
miRNA:   3'- uauCCGCGGUUGCUGCG--UUUCG-------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 92497 0.77 0.308732
Target:  5'- -cGGGCGUCAGCGucaggcuGCGCcugcAGCGCGCg -3'
miRNA:   3'- uaUCCGCGGUUGC-------UGCGuu--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 26641 0.77 0.309459
Target:  5'- -aGGGCGCC-ACGGCGaCAAAGgGCGa -3'
miRNA:   3'- uaUCCGCGGuUGCUGC-GUUUCgCGCg -5'
6744 5' -55.3 NC_001875.2 + 112715 0.77 0.31681
Target:  5'- --cGGCGCCGccgugguaGGCGCGucGCGCGCa -3'
miRNA:   3'- uauCCGCGGUug------CUGCGUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 110263 0.77 0.331905
Target:  5'- --cGGCuggGCCGGCuGGcCGCGGAGCGCGCg -3'
miRNA:   3'- uauCCG---CGGUUG-CU-GCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 88157 0.77 0.331905
Target:  5'- uGUGGGCGCaCGACGGCaaacggugcaugGuCGAGGCGUGCa -3'
miRNA:   3'- -UAUCCGCG-GUUGCUG------------C-GUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 56344 0.77 0.339648
Target:  5'- gGUAuGCGCCuGCGACGCA-GGCGCGa -3'
miRNA:   3'- -UAUcCGCGGuUGCUGCGUuUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 90454 0.76 0.345936
Target:  5'- -gAGGCGUCGguggGCGGCGCGuaauuucgcugcAGCGCGCg -3'
miRNA:   3'- uaUCCGCGGU----UGCUGCGUu-----------UCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.