miRNA display CGI


Results 1 - 20 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 113266 1.09 0.002319
Target:  5'- aAUAGGCGCCAACGACGCAAAGCGCGCu -3'
miRNA:   3'- -UAUCCGCGGUUGCUGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 131513 0.83 0.143443
Target:  5'- --cGGCGCgCGgugcagcggcuggaaGCGGCGCAAAGCGCGCc -3'
miRNA:   3'- uauCCGCG-GU---------------UGCUGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 57146 0.82 0.159305
Target:  5'- cGUGGGCGCCAACGGCGgGucgaaaaacuguugaAAGCGCaGCu -3'
miRNA:   3'- -UAUCCGCGGUUGCUGCgU---------------UUCGCG-CG- -5'
6744 5' -55.3 NC_001875.2 + 36418 0.82 0.163511
Target:  5'- -cGGGCGCCGcgaggccuuaccuuuGCGACGCc-GGCGCGCu -3'
miRNA:   3'- uaUCCGCGGU---------------UGCUGCGuuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 100172 0.82 0.170449
Target:  5'- gGUGGGCGCgAGCGGCaugaAAAGCGCGCc -3'
miRNA:   3'- -UAUCCGCGgUUGCUGcg--UUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 31955 0.82 0.170449
Target:  5'- -gAGGCuGCCGGCGACGaCGAacgcguguGGCGCGCg -3'
miRNA:   3'- uaUCCG-CGGUUGCUGC-GUU--------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 101961 0.81 0.182753
Target:  5'- -aAGGCGCCGguggcgaacGCGACGCAGgcguugugcauugcGGCGUGCg -3'
miRNA:   3'- uaUCCGCGGU---------UGCUGCGUU--------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 33946 0.81 0.188954
Target:  5'- --cGGCGCCGACGccCGCAAcgugcccgugcGGCGCGCa -3'
miRNA:   3'- uauCCGCGGUUGCu-GCGUU-----------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 115303 0.81 0.188954
Target:  5'- -aGGGCGCCGACGugGC--GGCGCa- -3'
miRNA:   3'- uaUCCGCGGUUGCugCGuuUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 33797 0.81 0.192861
Target:  5'- cUAGGCGCacuugcccguCGGCGCAcGGCGCGCg -3'
miRNA:   3'- uAUCCGCGguu-------GCUGCGUuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 44454 0.8 0.209202
Target:  5'- -aAGGCGCCGuCGGCGCA--GUGCGCc -3'
miRNA:   3'- uaUCCGCGGUuGCUGCGUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 61602 0.8 0.225594
Target:  5'- -cGGGCGCCGGCGGCGCuucGGGCuGUGUc -3'
miRNA:   3'- uaUCCGCGGUUGCUGCGu--UUCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 125620 0.8 0.225594
Target:  5'- cUGGGCgugucGCCGACgGACGCAAuuGCGCGCu -3'
miRNA:   3'- uAUCCG-----CGGUUG-CUGCGUUu-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 72086 0.79 0.237118
Target:  5'- uUGGGCGCCGugGuuucGCGCAAAGUGCu- -3'
miRNA:   3'- uAUCCGCGGUugC----UGCGUUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 63262 0.79 0.243062
Target:  5'- --cGGCgGCCAGCGGCGCcacgcGGUGCGCg -3'
miRNA:   3'- uauCCG-CGGUUGCUGCGuu---UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 98925 0.79 0.24913
Target:  5'- --cGGCGCCGguugcGCGuGCGCGAcGCGCGCg -3'
miRNA:   3'- uauCCGCGGU-----UGC-UGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 41455 0.79 0.24913
Target:  5'- -cAGGCGCCGguuGCGGCGCGcgcGGCGUGUc -3'
miRNA:   3'- uaUCCGCGGU---UGCUGCGUu--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 9601 0.79 0.251592
Target:  5'- gGUGGGCGCgugCAACGACGCGuuugugcuaagcugcGuGCGCGCg -3'
miRNA:   3'- -UAUCCGCG---GUUGCUGCGU---------------UuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 130648 0.79 0.255323
Target:  5'- -cAGGCGCaugcgguuCAGCGugGCAAAGUGcCGCg -3'
miRNA:   3'- uaUCCGCG--------GUUGCugCGUUUCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 21488 0.79 0.261641
Target:  5'- aAUAGGCGUCgGGCGACGCcGAGUGCaGCc -3'
miRNA:   3'- -UAUCCGCGG-UUGCUGCGuUUCGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.