miRNA display CGI


Results 1 - 20 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 130451 0.75 0.388814
Target:  5'- -aGGGCGCCGcUGACGCAccGCuaGCa -3'
miRNA:   3'- uaUCCGCGGUuGCUGCGUuuCGcgCG- -5'
6744 5' -55.3 NC_001875.2 + 90454 0.76 0.345936
Target:  5'- -gAGGCGUCGguggGCGGCGCGuaauuucgcugcAGCGCGCg -3'
miRNA:   3'- uaUCCGCGGU----UGCUGCGUu-----------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 99400 0.76 0.355524
Target:  5'- --cGGCGCCAGCGGguCGCGcAGCGCa- -3'
miRNA:   3'- uauCCGCGGUUGCU--GCGUuUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 53913 0.76 0.355524
Target:  5'- uGUGGGCGCgCcguuGCgGGCGCGuuGGCGCGCa -3'
miRNA:   3'- -UAUCCGCG-Gu---UG-CUGCGUu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 49590 0.76 0.355524
Target:  5'- ---cGCGCCGACGAgCGCuaccaccAGCGCGCa -3'
miRNA:   3'- uaucCGCGGUUGCU-GCGuu-----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 92618 0.76 0.371915
Target:  5'- gGUGGGCGCgAGCGGCuu---GCGCGCg -3'
miRNA:   3'- -UAUCCGCGgUUGCUGcguuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 72960 0.76 0.379457
Target:  5'- -cGGGCGCC-ACGGCGCGccugauuAGGuUGCGCa -3'
miRNA:   3'- uaUCCGCGGuUGCUGCGU-------UUC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 23794 0.76 0.380302
Target:  5'- -cAGGuCGCCGacgugucgcuccGCGGCGUcgGGCGCGCc -3'
miRNA:   3'- uaUCC-GCGGU------------UGCUGCGuuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 109120 0.76 0.380302
Target:  5'- uAUAGGCGgCGACGGCGgCGGucuuGGCGaCGCa -3'
miRNA:   3'- -UAUCCGCgGUUGCUGC-GUU----UCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 56344 0.77 0.339648
Target:  5'- gGUAuGCGCCuGCGACGCA-GGCGCGa -3'
miRNA:   3'- -UAUcCGCGGuUGCUGCGUuUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 110263 0.77 0.331905
Target:  5'- --cGGCuggGCCGGCuGGcCGCGGAGCGCGCg -3'
miRNA:   3'- uauCCG---CGGUUG-CU-GCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 116927 0.77 0.302239
Target:  5'- --uGGCGCaCAAUGACGUAGAGCauccacacGCGCg -3'
miRNA:   3'- uauCCGCG-GUUGCUGCGUUUCG--------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 31955 0.82 0.170449
Target:  5'- -gAGGCuGCCGGCGACGaCGAacgcguguGGCGCGCg -3'
miRNA:   3'- uaUCCG-CGGUUGCUGC-GUU--------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 100172 0.82 0.170449
Target:  5'- gGUGGGCGCgAGCGGCaugaAAAGCGCGCc -3'
miRNA:   3'- -UAUCCGCGgUUGCUGcg--UUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 115303 0.81 0.188954
Target:  5'- -aGGGCGCCGACGugGC--GGCGCa- -3'
miRNA:   3'- uaUCCGCGGUUGCugCGuuUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 44454 0.8 0.209202
Target:  5'- -aAGGCGCCGuCGGCGCA--GUGCGCc -3'
miRNA:   3'- uaUCCGCGGUuGCUGCGUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 100901 0.78 0.274659
Target:  5'- -cGGGCGCCGcaGCG-CGCGGAGaCGCGUc -3'
miRNA:   3'- uaUCCGCGGU--UGCuGCGUUUC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 88226 0.78 0.28819
Target:  5'- uUGGGCaaaAACGGCGCAAgcGGCGCGCg -3'
miRNA:   3'- uAUCCGcggUUGCUGCGUU--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 54989 0.78 0.294448
Target:  5'- cUGGGCGCCuuucguuuCGugGCGAuuuugaccagcgcGGCGCGCu -3'
miRNA:   3'- uAUCCGCGGuu------GCugCGUU-------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 68625 0.78 0.295149
Target:  5'- -cGGGCgacGCgGGCGACGUAAAGCuGCGCu -3'
miRNA:   3'- uaUCCG---CGgUUGCUGCGUUUCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.