miRNA display CGI


Results 1 - 20 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 115761 0.66 0.87823
Target:  5'- --cGuGCGCCAAacCGGCGCcguGUGCGUc -3'
miRNA:   3'- uauC-CGCGGUU--GCUGCGuuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 51316 0.66 0.87081
Target:  5'- aGUGGGCGUCGGCcagcuCGCA---CGCGCc -3'
miRNA:   3'- -UAUCCGCGGUUGcu---GCGUuucGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 85824 0.66 0.88542
Target:  5'- --cGGCGCCAGCuGCGUG-GGCG-GCc -3'
miRNA:   3'- uauCCGCGGUUGcUGCGUuUCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 84991 0.66 0.88542
Target:  5'- gGUGGGCauuuCCAgcaGCGuGCGCAAcGUGUGCa -3'
miRNA:   3'- -UAUCCGc---GGU---UGC-UGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 32797 0.66 0.877499
Target:  5'- -cGGGCGCCGcgcCGGCaagcucgGCGAacGGCGcCGCu -3'
miRNA:   3'- uaUCCGCGGUu--GCUG-------CGUU--UCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 84924 0.66 0.87081
Target:  5'- --cGGgGCUGGCGAaGCAAcGCGCGa -3'
miRNA:   3'- uauCCgCGGUUGCUgCGUUuCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 11036 0.66 0.873805
Target:  5'- gAUGGGCGaCCAguuucaccACGcGCGCAaacugcagcaguuugGcguGGCGCGCg -3'
miRNA:   3'- -UAUCCGC-GGU--------UGC-UGCGU---------------U---UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 35628 0.66 0.87823
Target:  5'- ----aCGCCGACGcggacuaucugGCGCAgcgcAAGUGCGCg -3'
miRNA:   3'- uauccGCGGUUGC-----------UGCGU----UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 68562 0.66 0.87823
Target:  5'- --cGGCGgCGGCGgucGCGCAccGCGUGg -3'
miRNA:   3'- uauCCGCgGUUGC---UGCGUuuCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 31601 0.66 0.87823
Target:  5'- --cGGCGCCGugcCGugGgCGGAccacauGCGCGUg -3'
miRNA:   3'- uauCCGCGGUu--GCugC-GUUU------CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 74321 0.66 0.87823
Target:  5'- -cAGGCGCCGGacagcacgGGCGUcaaAAAGUGgGCu -3'
miRNA:   3'- uaUCCGCGGUUg-------CUGCG---UUUCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 54941 0.66 0.884712
Target:  5'- cUGGGCGCCGccccuuuGCGcGCGCGuuugccGGaCGCGUc -3'
miRNA:   3'- uAUCCGCGGU-------UGC-UGCGUu-----UC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 93780 0.66 0.87081
Target:  5'- -----aGCCGuuuACGGCGCAAGuCGCGCg -3'
miRNA:   3'- uauccgCGGU---UGCUGCGUUUcGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 83873 0.66 0.87081
Target:  5'- uAUAGacGCGCaCGGgGGCGCGGAGUGCc- -3'
miRNA:   3'- -UAUC--CGCG-GUUgCUGCGUUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 16276 0.66 0.88542
Target:  5'- --uGGUGcCCGGCGAcCGCAcguccauGUGCGCc -3'
miRNA:   3'- uauCCGC-GGUUGCU-GCGUuu-----CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 61962 0.66 0.87081
Target:  5'- -cGGcGCGCCuaGAUGugGCAAAcaagaccuGCGCGg -3'
miRNA:   3'- uaUC-CGCGG--UUGCugCGUUU--------CGCGCg -5'
6744 5' -55.3 NC_001875.2 + 120266 0.66 0.905563
Target:  5'- cGUAGGCGCaCAcCGcucccCGCuucggcGGCGCGUa -3'
miRNA:   3'- -UAUCCGCG-GUuGCu----GCGuu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 29552 0.66 0.873805
Target:  5'- -cGGcGCGCCAAUuGCucgggagcucauucuGCAAcGCGCGCg -3'
miRNA:   3'- uaUC-CGCGGUUGcUG---------------CGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 101174 0.66 0.88542
Target:  5'- -aGGGuCGCCGcUGACGCAccGCuaaaaauagcacGCGCu -3'
miRNA:   3'- uaUCC-GCGGUuGCUGCGUuuCG------------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 61909 0.66 0.870056
Target:  5'- ---cGCGCCGugucACGGCGgAAacgcgaacaauuuAGCGCGCc -3'
miRNA:   3'- uaucCGCGGU----UGCUGCgUU-------------UCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.