miRNA display CGI


Results 21 - 40 of 502 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 115761 0.66 0.87823
Target:  5'- --cGuGCGCCAAacCGGCGCcguGUGCGUc -3'
miRNA:   3'- uauC-CGCGGUU--GCUGCGuuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 120266 0.66 0.905563
Target:  5'- cGUAGGCGCaCAcCGcucccCGCuucggcGGCGCGUa -3'
miRNA:   3'- -UAUCCGCG-GUuGCu----GCGuu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 54941 0.66 0.884712
Target:  5'- cUGGGCGCCGccccuuuGCGcGCGCGuuugccGGaCGCGUc -3'
miRNA:   3'- uAUCCGCGGU-------UGC-UGCGUu-----UC-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 84991 0.66 0.88542
Target:  5'- gGUGGGCauuuCCAgcaGCGuGCGCAAcGUGUGCa -3'
miRNA:   3'- -UAUCCGc---GGU---UGC-UGCGUUuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 13025 0.66 0.892375
Target:  5'- ---cGCGgCAGCuuUGCAaaAAGCGCGCa -3'
miRNA:   3'- uaucCGCgGUUGcuGCGU--UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 73726 0.66 0.892375
Target:  5'- -cAGaGCGCUAcaccgaccuguACGACGCuaacaacGUGCGCa -3'
miRNA:   3'- uaUC-CGCGGU-----------UGCUGCGuuu----CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 61962 0.66 0.87081
Target:  5'- -cGGcGCGCCuaGAUGugGCAAAcaagaccuGCGCGg -3'
miRNA:   3'- uaUC-CGCGG--UUGCugCGUUU--------CGCGCg -5'
6744 5' -55.3 NC_001875.2 + 31601 0.66 0.87823
Target:  5'- --cGGCGCCGugcCGugGgCGGAccacauGCGCGUg -3'
miRNA:   3'- uauCCGCGGUu--GCugC-GUUU------CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 61909 0.66 0.870056
Target:  5'- ---cGCGCCGugucACGGCGgAAacgcgaacaauuuAGCGCGCc -3'
miRNA:   3'- uaucCGCGGU----UGCUGCgUU-------------UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 110816 0.66 0.88542
Target:  5'- ---cGCGCagGugGACGCGcuGGUGCGCc -3'
miRNA:   3'- uaucCGCGg-UugCUGCGUu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 68562 0.66 0.87823
Target:  5'- --cGGCGgCGGCGgucGCGCAccGCGUGg -3'
miRNA:   3'- uauCCGCgGUUGC---UGCGUuuCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 62604 0.66 0.89843
Target:  5'- -cAGcGCGCCGuucgACGccgccguguccgaAUGCAAGGUGUGCu -3'
miRNA:   3'- uaUC-CGCGGU----UGC-------------UGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 93780 0.66 0.87081
Target:  5'- -----aGCCGuuuACGGCGCAAGuCGCGCg -3'
miRNA:   3'- uauccgCGGU---UGCUGCGUUUcGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 83873 0.66 0.87081
Target:  5'- uAUAGacGCGCaCGGgGGCGCGGAGUGCc- -3'
miRNA:   3'- -UAUC--CGCG-GUUgCUGCGUUUCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 85824 0.66 0.88542
Target:  5'- --cGGCGCCAGCuGCGUG-GGCG-GCc -3'
miRNA:   3'- uauCCGCGGUUGcUGCGUuUCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 101438 0.66 0.88542
Target:  5'- -aGGGuCGCCGcUGACGCAccGCuaaaaauagcacGCGCu -3'
miRNA:   3'- uaUCC-GCGGUuGCUGCGUuuCG------------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 52512 0.66 0.892375
Target:  5'- --cGGCGCCAAaGGCaGCGccGCGCu- -3'
miRNA:   3'- uauCCGCGGUUgCUG-CGUuuCGCGcg -5'
6744 5' -55.3 NC_001875.2 + 16532 0.66 0.89909
Target:  5'- -gAGGuCGCgcgugcaauaCAAUGACGUgcgcGGCGCGCu -3'
miRNA:   3'- uaUCC-GCG----------GUUGCUGCGuu--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 74102 0.66 0.892375
Target:  5'- uUGGGC---AGCGACGCcgugcuGGCGCGUg -3'
miRNA:   3'- uAUCCGcggUUGCUGCGuu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 11160 0.66 0.88542
Target:  5'- -gAGGCGUaccGCGcGCGCAucgacaaguuGCGCGCc -3'
miRNA:   3'- uaUCCGCGgu-UGC-UGCGUuu--------CGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.