miRNA display CGI


Results 21 - 40 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 5302 0.66 0.88542
Target:  5'- ---cGCGcCCGACGACcacucCAuuGCGCGCu -3'
miRNA:   3'- uaucCGC-GGUUGCUGc----GUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 5400 0.73 0.540092
Target:  5'- -aGGGCGUCAACGAgcUGCucGAGGUGCaGCg -3'
miRNA:   3'- uaUCCGCGGUUGCU--GCG--UUUCGCG-CG- -5'
6744 5' -55.3 NC_001875.2 + 5496 0.68 0.785421
Target:  5'- --cGGUGCaCAGCacgaccGGCGCAc-GCGCGCa -3'
miRNA:   3'- uauCCGCG-GUUG------CUGCGUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 5558 0.67 0.838948
Target:  5'- -aAGGUGCCAgucACGGCGacu-GUGCGg -3'
miRNA:   3'- uaUCCGCGGU---UGCUGCguuuCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 5975 0.72 0.550303
Target:  5'- uGUGGuCGCCGACGGCagGCccAGCGCGUg -3'
miRNA:   3'- -UAUCcGCGGUUGCUG--CGuuUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6191 0.66 0.88542
Target:  5'- ---uGUGCCcGCG-CGCcguuucAAAGCGCGCa -3'
miRNA:   3'- uaucCGCGGuUGCuGCG------UUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6485 0.69 0.756584
Target:  5'- --cGGCGCCca--ACGCGGAGUGcCGCg -3'
miRNA:   3'- uauCCGCGGuugcUGCGUUUCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 6635 0.69 0.746727
Target:  5'- ---cGUGCCAGCGAuCGgGAAacauuGCGCGCg -3'
miRNA:   3'- uaucCGCGGUUGCU-GCgUUU-----CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6953 0.66 0.905563
Target:  5'- --cGuGCGCC-GCGAcauCGCcacGGCGCGCu -3'
miRNA:   3'- uauC-CGCGGuUGCU---GCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6999 0.69 0.714528
Target:  5'- uGUGGGUgugcugcugGCCGGCGGCGCGuaucugaccuuuAGCGcCGCc -3'
miRNA:   3'- -UAUCCG---------CGGUUGCUGCGUu-----------UCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 7009 0.69 0.716566
Target:  5'- cGUGGcGCGCCAguuGCugGACGUAAGcgagguggccGCGCGCu -3'
miRNA:   3'- -UAUC-CGCGGU---UG--CUGCGUUU----------CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 7422 0.75 0.415086
Target:  5'- uUGGGC-CCAACGACgaggGCAAcuGCGCGCc -3'
miRNA:   3'- uAUCCGcGGUUGCUG----CGUUu-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 7572 0.68 0.812958
Target:  5'- -cGGGuCGUCGACGAC-CAAcGCGcCGCc -3'
miRNA:   3'- uaUCC-GCGGUUGCUGcGUUuCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 8498 0.67 0.830471
Target:  5'- -cGGGCGCCguccguGugGGCGC----CGCGCa -3'
miRNA:   3'- uaUCCGCGG------UugCUGCGuuucGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 8584 0.69 0.735764
Target:  5'- -cGGGCGCCGaccucgaguuuaaACGACuuGu-GCGCGCu -3'
miRNA:   3'- uaUCCGCGGU-------------UGCUGcgUuuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 8990 0.67 0.838948
Target:  5'- -cGGGUGgCAgcgaaacacgucGCGGCGCAccaaauccGAGUGUGCa -3'
miRNA:   3'- uaUCCGCgGU------------UGCUGCGU--------UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 9601 0.79 0.251592
Target:  5'- gGUGGGCGCgugCAACGACGCGuuugugcuaagcugcGuGCGCGCg -3'
miRNA:   3'- -UAUCCGCG---GUUGCUGCGU---------------UuCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 9709 0.66 0.89843
Target:  5'- cGUGcGCGCCGGCcGCGCcgcgcccGAAGCGUGg -3'
miRNA:   3'- -UAUcCGCGGUUGcUGCG-------UUUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 9808 0.67 0.86625
Target:  5'- --cGGCGCCAucgGCGGCugcuauaaaaaacggGCGAGGC-CGUa -3'
miRNA:   3'- uauCCGCGGU---UGCUG---------------CGUUUCGcGCG- -5'
6744 5' -55.3 NC_001875.2 + 9901 0.68 0.812958
Target:  5'- ---uGCGCUcACGuuacuCGCGAcuGGCGCGCg -3'
miRNA:   3'- uaucCGCGGuUGCu----GCGUU--UCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.