Results 41 - 60 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 80815 | 0.66 | 0.967163 |
Target: 5'- ----cACGUG--GCUG-UGGCGCCGUu -3' miRNA: 3'- auuuuUGCACagCGACuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 70604 | 0.66 | 0.966185 |
Target: 5'- aAAAGACGgg-CGCUacauggccugccccGAacauuuguacgaCGGCGCCGCg -3' miRNA: 3'- aUUUUUGCacaGCGA--------------CU------------GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 101100 | 0.66 | 0.960253 |
Target: 5'- aUAAAAGCGggGUCGCcgcUGAC-GCaCCGCu -3' miRNA: 3'- -AUUUUUGCa-CAGCG---ACUGcCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 118232 | 0.66 | 0.960253 |
Target: 5'- ----uGCGUGUUGUgccaaaacaauUGGCGG-GCUGCa -3' miRNA: 3'- auuuuUGCACAGCG-----------ACUGCCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 130275 | 0.66 | 0.956447 |
Target: 5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3' miRNA: 3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 130143 | 0.66 | 0.956447 |
Target: 5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3' miRNA: 3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80603 | 0.66 | 0.956447 |
Target: 5'- aAAGAAUG-GUCGUcacgGugGGCG-CGCg -3' miRNA: 3'- aUUUUUGCaCAGCGa---CugCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 101173 | 0.66 | 0.967163 |
Target: 5'- ----cGCGUGgCGCUGGucaauuacgugcCGGCGCC-Ca -3' miRNA: 3'- auuuuUGCACaGCGACU------------GCCGCGGcG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 5971 | 0.67 | 0.93373 |
Target: 5'- --uGAAUGUgGUCGCcGACGGCagGCCcaGCg -3' miRNA: 3'- auuUUUGCA-CAGCGaCUGCCG--CGG--CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 17468 | 0.67 | 0.938776 |
Target: 5'- cGAGAugcACgGUGUUauggccagcaaGUUGGCGGaCGCCGCg -3' miRNA: 3'- aUUUU---UG-CACAG-----------CGACUGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 46206 | 0.67 | 0.938776 |
Target: 5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3' miRNA: 3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36871 | 0.67 | 0.943568 |
Target: 5'- aAAGAACGUcGUCGUgcgcGCGGCacaCCGCc -3' miRNA: 3'- aUUUUUGCA-CAGCGac--UGCCGc--GGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 94011 | 0.67 | 0.952401 |
Target: 5'- ---cAGCGUGUCGUacgUGAUcgccaccgccuuGGCGUCGUc -3' miRNA: 3'- auuuUUGCACAGCG---ACUG------------CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 88965 | 0.67 | 0.952401 |
Target: 5'- uUGAAcGCGUugCGCUGGCGgaccuGCGCCuGCg -3' miRNA: 3'- -AUUUuUGCAcaGCGACUGC-----CGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 43735 | 0.67 | 0.952401 |
Target: 5'- uUGGAAACGggcGUUgGCUGGCuuGGCuGCUGCg -3' miRNA: 3'- -AUUUUUGCa--CAG-CGACUG--CCG-CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 2728 | 0.67 | 0.948109 |
Target: 5'- --cAAGCGUucgucgucGUCGCUGucauugaaaGGCGCCaGCg -3' miRNA: 3'- auuUUUGCA--------CAGCGACug-------CCGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 43575 | 0.67 | 0.952401 |
Target: 5'- ---cAGCGUcaUGCUGGCGGCGa-GCg -3' miRNA: 3'- auuuUUGCAcaGCGACUGCCGCggCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54946 | 0.67 | 0.943568 |
Target: 5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3' miRNA: 3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 40411 | 0.67 | 0.948109 |
Target: 5'- --cGGACGUgGUCaacaccgagggGCUGACGcGCGCCa- -3' miRNA: 3'- auuUUUGCA-CAG-----------CGACUGC-CGCGGcg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 47445 | 0.67 | 0.952401 |
Target: 5'- uUGAAucCGUGuacaUCGgUGAaauUGGUGCCGCa -3' miRNA: 3'- -AUUUuuGCAC----AGCgACU---GCCGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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