Results 21 - 40 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 75476 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 99384 | 0.66 | 0.973177 |
Target: 5'- -cAAAGCGc--CGCaccGGCGGCGCCaGCg -3' miRNA: 3'- auUUUUGCacaGCGa--CUGCCGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75374 | 0.66 | 0.970279 |
Target: 5'- --uGAugGcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- auuUUugCaCAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 83328 | 0.66 | 0.970279 |
Target: 5'- --uAAACGcgGUC-UUGACguGGUGCCGCa -3' miRNA: 3'- auuUUUGCa-CAGcGACUG--CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 13243 | 0.66 | 0.970279 |
Target: 5'- aAAAAACa---CGUUaaacacGGCGGCGCCGCg -3' miRNA: 3'- aUUUUUGcacaGCGA------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80629 | 0.66 | 0.967163 |
Target: 5'- -cGGAACGcG-CGCUcgacgGGCGGCGCCa- -3' miRNA: 3'- auUUUUGCaCaGCGA-----CUGCCGCGGcg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 5068 | 0.66 | 0.970279 |
Target: 5'- gGAAAACGUcGUCGCgcacgucGACcaccuaauGGgGCUGCg -3' miRNA: 3'- aUUUUUGCA-CAGCGa------CUG--------CCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 130209 | 0.66 | 0.956447 |
Target: 5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3' miRNA: 3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 103439 | 0.66 | 0.963823 |
Target: 5'- -----cUGUGuUUGCUGgucuGCGGCGUCGUg -3' miRNA: 3'- auuuuuGCAC-AGCGAC----UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 70604 | 0.66 | 0.966185 |
Target: 5'- aAAAGACGgg-CGCUacauggccugccccGAacauuuguacgaCGGCGCCGCg -3' miRNA: 3'- aUUUUUGCacaGCGA--------------CU------------GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 15565 | 0.66 | 0.967163 |
Target: 5'- aUAGAGGCG-GUCa-UG-CGGCGUCGCc -3' miRNA: 3'- -AUUUUUGCaCAGcgACuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 49442 | 0.66 | 0.970279 |
Target: 5'- -cGAAACcg--CGCggcugacggugGACGGCGCCGUg -3' miRNA: 3'- auUUUUGcacaGCGa----------CUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 69591 | 0.66 | 0.956447 |
Target: 5'- gGAGuACGUGUggCGCUuuacGCGGCGCgCGUc -3' miRNA: 3'- aUUUuUGCACA--GCGAc---UGCCGCG-GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 89272 | 0.66 | 0.956447 |
Target: 5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3' miRNA: 3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80815 | 0.66 | 0.967163 |
Target: 5'- ----cACGUG--GCUG-UGGCGCCGUu -3' miRNA: 3'- auuuuUGCACagCGACuGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 71122 | 0.66 | 0.969977 |
Target: 5'- ------gGUGUUGCUGuggcuggGCGGCcucagcgcgGCCGCg -3' miRNA: 3'- auuuuugCACAGCGAC-------UGCCG---------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 119056 | 0.66 | 0.973177 |
Target: 5'- ---cGGCGUG-CGCaUGugcGCGGCGCCccgGCu -3' miRNA: 3'- auuuUUGCACaGCG-AC---UGCCGCGG---CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 65436 | 0.66 | 0.970279 |
Target: 5'- ---cGGCGUGcacCGCUGGCGGUcgGUgGCc -3' miRNA: 3'- auuuUUGCACa--GCGACUGCCG--CGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75296 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 75446 | 0.66 | 0.970279 |
Target: 5'- cGAugGCGUcggcGUUGgUGAUGGCGUCGg -3' miRNA: 3'- aUUuuUGCA----CAGCgACUGCCGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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