miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 71122 0.66 0.969977
Target:  5'- ------gGUGUUGCUGuggcuggGCGGCcucagcgcgGCCGCg -3'
miRNA:   3'- auuuuugCACAGCGAC-------UGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 32876 0.66 0.956447
Target:  5'- ---uAGCGU-UCGCUG-CaGCGCUGCa -3'
miRNA:   3'- auuuUUGCAcAGCGACuGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80815 0.66 0.967163
Target:  5'- ----cACGUG--GCUG-UGGCGCCGUu -3'
miRNA:   3'- auuuuUGCACagCGACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 15565 0.66 0.967163
Target:  5'- aUAGAGGCG-GUCa-UG-CGGCGUCGCc -3'
miRNA:   3'- -AUUUUUGCaCAGcgACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 130209 0.66 0.956447
Target:  5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 118232 0.66 0.960253
Target:  5'- ----uGCGUGUUGUgccaaaacaauUGGCGG-GCUGCa -3'
miRNA:   3'- auuuuUGCACAGCG-----------ACUGCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 130275 0.66 0.956447
Target:  5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 75374 0.66 0.970279
Target:  5'- --uGAugGcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- auuUUugCaCAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 103439 0.66 0.963823
Target:  5'- -----cUGUGuUUGCUGgucuGCGGCGUCGUg -3'
miRNA:   3'- auuuuuGCAC-AGCGAC----UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65436 0.66 0.970279
Target:  5'- ---cGGCGUGcacCGCUGGCGGUcgGUgGCc -3'
miRNA:   3'- auuuUUGCACa--GCGACUGCCG--CGgCG- -5'
6745 3' -52.7 NC_001875.2 + 130143 0.66 0.956447
Target:  5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 70604 0.66 0.966185
Target:  5'- aAAAGACGgg-CGCUacauggccugccccGAacauuuguacgaCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacaGCGA--------------CU------------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83328 0.66 0.970279
Target:  5'- --uAAACGcgGUC-UUGACguGGUGCCGCa -3'
miRNA:   3'- auuUUUGCa-CAGcGACUG--CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 101100 0.66 0.960253
Target:  5'- aUAAAAGCGggGUCGCcgcUGAC-GCaCCGCu -3'
miRNA:   3'- -AUUUUUGCa-CAGCG---ACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 104750 0.66 0.973177
Target:  5'- --cGGGCGUGg-GCgu-CGGCGCCGa -3'
miRNA:   3'- auuUUUGCACagCGacuGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 80603 0.66 0.956447
Target:  5'- aAAGAAUG-GUCGUcacgGugGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCaCAGCGa---CugCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 103115 0.66 0.963823
Target:  5'- -----uCGUGgcUCGCuUGGCGGCgGCgGCg -3'
miRNA:   3'- auuuuuGCAC--AGCG-ACUGCCG-CGgCG- -5'
6745 3' -52.7 NC_001875.2 + 54003 0.66 0.956447
Target:  5'- --------gGUCGCgcacggccuUGGCGGCGCgCGCg -3'
miRNA:   3'- auuuuugcaCAGCG---------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 39171 0.66 0.956447
Target:  5'- -cGAGGCGggccggcgGUUGCgUGGCGuuuacgguGCGCCGCu -3'
miRNA:   3'- auUUUUGCa-------CAGCG-ACUGC--------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 75415 0.66 0.963823
Target:  5'- gUGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- -AUUuuUGCA----CAGCgACUGCCGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.