miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 8498 0.71 0.810696
Target:  5'- --cGGGCGccGUCcgUGugGGCGCCGCg -3'
miRNA:   3'- auuUUUGCa-CAGcgACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 4427 0.73 0.68183
Target:  5'- ---cGGCGgcaUGCUGACGcGCGCCGCc -3'
miRNA:   3'- auuuUUGCacaGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 100057 0.73 0.692287
Target:  5'- -----uUGUGgaGCUGACGGUGCUGCu -3'
miRNA:   3'- auuuuuGCACagCGACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41707 0.72 0.723294
Target:  5'- -cAGGGCGUaugcgcggCGCUGcGCGGCGUCGCa -3'
miRNA:   3'- auUUUUGCAca------GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 99744 0.72 0.743564
Target:  5'- cGuuAACGUGaCGCUGugugcguuUGGCGCCGUu -3'
miRNA:   3'- aUuuUUGCACaGCGACu-------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110159 0.72 0.763417
Target:  5'- -----cCGcGUCGCgcucgucgGGCGGCGUCGCa -3'
miRNA:   3'- auuuuuGCaCAGCGa-------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 113631 0.72 0.763417
Target:  5'- cAAGAGCG----GC-GACGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacagCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54932 0.71 0.782772
Target:  5'- -----uCGUcGUCGCUG--GGCGCCGCc -3'
miRNA:   3'- auuuuuGCA-CAGCGACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83399 0.71 0.782772
Target:  5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3'
miRNA:   3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 111781 0.73 0.67133
Target:  5'- ------gGUGUCGCuggUGACGGCGgUGCa -3'
miRNA:   3'- auuuuugCACAGCG---ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 97412 0.74 0.650237
Target:  5'- uUGAuuAUG-GUCGC-GGCGGCGaCCGCg -3'
miRNA:   3'- -AUUuuUGCaCAGCGaCUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 36412 0.74 0.650237
Target:  5'- ----cGCGca-CGCUGGcCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCacaGCGACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 59092 0.81 0.296822
Target:  5'- cGGAAACG-GUUuccagGCUGACGGCGUCGCu -3'
miRNA:   3'- aUUUUUGCaCAG-----CGACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110687 0.79 0.383194
Target:  5'- aAGAAGCG-GcCGCgGAgGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaCaGCGaCUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 23802 0.77 0.45568
Target:  5'- ---cGACGUGUCGCUccGCGGCGUCGg -3'
miRNA:   3'- auuuUUGCACAGCGAc-UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 29070 0.75 0.597389
Target:  5'- --cGGGCGUGUUGCUGccACGGCGCguCGUc -3'
miRNA:   3'- auuUUUGCACAGCGAC--UGCCGCG--GCG- -5'
6745 3' -52.7 NC_001875.2 + 98746 0.75 0.597389
Target:  5'- ----uGCGUGcucagcCGC-GACGGCGCCGCc -3'
miRNA:   3'- auuuuUGCACa-----GCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 31313 0.74 0.617446
Target:  5'- ---cAACcUGUCGCUGGCGGUgcaacaaaaauuuGCCGCc -3'
miRNA:   3'- auuuUUGcACAGCGACUGCCG-------------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54446 0.74 0.618504
Target:  5'- ---uGGCG-GUCGUUagccGCGGCGCCGCa -3'
miRNA:   3'- auuuUUGCaCAGCGAc---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 37102 0.74 0.639663
Target:  5'- ----cGCGUGggugUGCgggcGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCACa---GCGac--UGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.