Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 112697 | 1.09 | 0.004699 |
Target: 5'- cUAAAAACGUGUCGCUGACGGCGCCGCc -3' miRNA: 3'- -AUUUUUGCACAGCGACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 114970 | 0.86 | 0.15355 |
Target: 5'- aUAGAAGCGgucgCGCUGGCGGCGCCGa -3' miRNA: 3'- -AUUUUUGCaca-GCGACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 78154 | 0.82 | 0.256457 |
Target: 5'- --cAAACGUGUuggCGCUGcGCGGCGCCGUc -3' miRNA: 3'- auuUUUGCACA---GCGAC-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 59092 | 0.81 | 0.296822 |
Target: 5'- cGGAAACG-GUUuccagGCUGACGGCGUCGCu -3' miRNA: 3'- aUUUUUGCaCAG-----CGACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 110687 | 0.79 | 0.383194 |
Target: 5'- aAGAAGCG-GcCGCgGAgGGCGCCGCg -3' miRNA: 3'- aUUUUUGCaCaGCGaCUgCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 12654 | 0.78 | 0.400591 |
Target: 5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3' miRNA: 3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 23802 | 0.77 | 0.45568 |
Target: 5'- ---cGACGUGUCGCUccGCGGCGUCGg -3' miRNA: 3'- auuuUUGCACAGCGAc-UGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125621 | 0.75 | 0.576383 |
Target: 5'- --uGGGCGUGUCGCcGACGGaCGCaauuGCg -3' miRNA: 3'- auuUUUGCACAGCGaCUGCC-GCGg---CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 98746 | 0.75 | 0.597389 |
Target: 5'- ----uGCGUGcucagcCGC-GACGGCGCCGCc -3' miRNA: 3'- auuuuUGCACa-----GCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 29070 | 0.75 | 0.597389 |
Target: 5'- --cGGGCGUGUUGCUGccACGGCGCguCGUc -3' miRNA: 3'- auuUUUGCACAGCGAC--UGCCGCG--GCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 31313 | 0.74 | 0.617446 |
Target: 5'- ---cAACcUGUCGCUGGCGGUgcaacaaaaauuuGCCGCc -3' miRNA: 3'- auuuUUGcACAGCGACUGCCG-------------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54446 | 0.74 | 0.618504 |
Target: 5'- ---uGGCG-GUCGUUagccGCGGCGCCGCa -3' miRNA: 3'- auuuUUGCaCAGCGAc---UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 41126 | 0.74 | 0.618504 |
Target: 5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3' miRNA: 3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 37102 | 0.74 | 0.639663 |
Target: 5'- ----cGCGUGggugUGCgggcGCGGCGCCGCg -3' miRNA: 3'- auuuuUGCACa---GCGac--UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 109015 | 0.74 | 0.639663 |
Target: 5'- -----uCGUGcCGCcGACGGUGCCGUc -3' miRNA: 3'- auuuuuGCACaGCGaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 102026 | 0.74 | 0.639663 |
Target: 5'- ---cAGCGUGcCGUUGACccauGCGCCGCc -3' miRNA: 3'- auuuUUGCACaGCGACUGc---CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 102495 | 0.74 | 0.639663 |
Target: 5'- cGGAAACGgaccacaaGCgGugGGCGCCGCa -3' miRNA: 3'- aUUUUUGCacag----CGaCugCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 113357 | 0.74 | 0.650237 |
Target: 5'- ----cGCGgcugcGUCGCUG-CGGCGCgGCg -3' miRNA: 3'- auuuuUGCa----CAGCGACuGCCGCGgCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 36412 | 0.74 | 0.650237 |
Target: 5'- ----cGCGca-CGCUGGcCGGCGCCGCg -3' miRNA: 3'- auuuuUGCacaGCGACU-GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 97412 | 0.74 | 0.650237 |
Target: 5'- uUGAuuAUG-GUCGC-GGCGGCGaCCGCg -3' miRNA: 3'- -AUUuuUGCaCAGCGaCUGCCGC-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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