miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 271 0.67 0.948109
Target:  5'- -----uUGUaUUGCUGGCGuCGCCGCa -3'
miRNA:   3'- auuuuuGCAcAGCGACUGCcGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 767 0.69 0.876933
Target:  5'- ---cAugGggcaGCUGACGGCGgCGCg -3'
miRNA:   3'- auuuUugCacagCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 1739 0.66 0.960253
Target:  5'- gAAcgGCGUGU-GCUaGCGGUGCCucaGCg -3'
miRNA:   3'- aUUuuUGCACAgCGAcUGCCGCGG---CG- -5'
6745 3' -52.7 NC_001875.2 + 2728 0.67 0.948109
Target:  5'- --cAAGCGUucgucgucGUCGCUGucauugaaaGGCGCCaGCg -3'
miRNA:   3'- auuUUUGCA--------CAGCGACug-------CCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 4427 0.73 0.68183
Target:  5'- ---cGGCGgcaUGCUGACGcGCGCCGCc -3'
miRNA:   3'- auuuUUGCacaGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5068 0.66 0.970279
Target:  5'- gGAAAACGUcGUCGCgcacgucGACcaccuaauGGgGCUGCg -3'
miRNA:   3'- aUUUUUGCA-CAGCGa------CUG--------CCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5122 0.7 0.828463
Target:  5'- cGGAAAgGUcacGUcCGCgGACGuGCGCCGCu -3'
miRNA:   3'- aUUUUUgCA---CA-GCGaCUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5720 0.7 0.837064
Target:  5'- cUAAGAACcgaacaaaGUgGUCGUUGAUGGCGaCGCg -3'
miRNA:   3'- -AUUUUUG--------CA-CAGCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 5971 0.67 0.93373
Target:  5'- --uGAAUGUgGUCGCcGACGGCagGCCcaGCg -3'
miRNA:   3'- auuUUUGCA-CAGCGaCUGCCG--CGG--CG- -5'
6745 3' -52.7 NC_001875.2 + 6806 0.69 0.876933
Target:  5'- -cAGAuCGgGUCGCUGAaccagcuGCGCCGCg -3'
miRNA:   3'- auUUUuGCaCAGCGACUgc-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 6936 0.69 0.869401
Target:  5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3'
miRNA:   3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7001 0.68 0.904676
Target:  5'- --uGggUGUGcUGCUGGcCGGCGgCGCg -3'
miRNA:   3'- auuUuuGCACaGCGACU-GCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 7467 0.66 0.97233
Target:  5'- cGAcAGCGUGagcaacaagcUCaugccgcucauuugGCUGAuCGGCGCCGUg -3'
miRNA:   3'- aUUuUUGCAC----------AG--------------CGACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7563 0.72 0.723294
Target:  5'- cAAAGGCGgcggGUCGUcGACGaccaacGCGCCGCc -3'
miRNA:   3'- aUUUUUGCa---CAGCGaCUGC------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 8498 0.71 0.810696
Target:  5'- --cGGGCGccGUCcgUGugGGCGCCGCg -3'
miRNA:   3'- auuUUUGCa-CAGcgACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 9708 0.67 0.93373
Target:  5'- -----uCGUGcgCGCcGGCcGCGCCGCg -3'
miRNA:   3'- auuuuuGCACa-GCGaCUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 11078 0.7 0.851225
Target:  5'- ---uGGCGUGgcgCGCgcccugGAcacggccgccgucuCGGCGCCGCa -3'
miRNA:   3'- auuuUUGCACa--GCGa-----CU--------------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 12654 0.78 0.400591
Target:  5'- aUAAAcAUGcUGUUGUUGACGcGCGCCGCg -3'
miRNA:   3'- -AUUUuUGC-ACAGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 12756 0.68 0.927885
Target:  5'- cGAAAugGguggcgGUUGUUGuccagccGgGGCGCCGCg -3'
miRNA:   3'- aUUUUugCa-----CAGCGAC-------UgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 13243 0.66 0.970279
Target:  5'- aAAAAACa---CGUUaaacacGGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGcacaGCGA------CUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.