miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 15565 0.66 0.967163
Target:  5'- aUAGAGGCG-GUCa-UG-CGGCGUCGCc -3'
miRNA:   3'- -AUUUUUGCaCAGcgACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 15992 0.68 0.910995
Target:  5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3'
miRNA:   3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 16066 0.68 0.917061
Target:  5'- --------cGUCGCUGuggacgcacACGGCGCCGg -3'
miRNA:   3'- auuuuugcaCAGCGAC---------UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 16890 0.69 0.869401
Target:  5'- ----uGCGUa-CGCgcaGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCAcaGCGac-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 17099 0.66 0.963823
Target:  5'- gAAAAgcACGgucGUCGCUGAC-GCaCCGCc -3'
miRNA:   3'- aUUUU--UGCa--CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 17468 0.67 0.938776
Target:  5'- cGAGAugcACgGUGUUauggccagcaaGUUGGCGGaCGCCGCg -3'
miRNA:   3'- aUUUU---UG-CACAG-----------CGACUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18451 0.68 0.922873
Target:  5'- ----cGCGUGgcgCGCgaauCGcGCGCCGCu -3'
miRNA:   3'- auuuuUGCACa--GCGacu-GC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18752 0.7 0.837064
Target:  5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3'
miRNA:   3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 19104 0.68 0.910995
Target:  5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3'
miRNA:   3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 19703 0.68 0.904676
Target:  5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3'
miRNA:   3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 21081 0.69 0.884231
Target:  5'- aAAAGACG---CGCggcGGCGGuCGCCGCg -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 21948 0.69 0.889898
Target:  5'- --uAAACGU-UCGCggcgcggggaugGGCGGCGCCaGCg -3'
miRNA:   3'- auuUUUGCAcAGCGa-----------CUGCCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 23802 0.77 0.45568
Target:  5'- ---cGACGUGUCGCUccGCGGCGUCGg -3'
miRNA:   3'- auuuUUGCACAGCGAc-UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 24274 0.72 0.743564
Target:  5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3'
miRNA:   3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 26231 0.66 0.973177
Target:  5'- ----cACGUGcaacCGCUcuUGGCGCUGCg -3'
miRNA:   3'- auuuuUGCACa---GCGAcuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 29070 0.75 0.597389
Target:  5'- --cGGGCGUGUUGCUGccACGGCGCguCGUc -3'
miRNA:   3'- auuUUUGCACAGCGAC--UGCCGCG--GCG- -5'
6745 3' -52.7 NC_001875.2 + 29795 0.69 0.867097
Target:  5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3'
miRNA:   3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5'
6745 3' -52.7 NC_001875.2 + 30936 0.66 0.970279
Target:  5'- --cGAGCGUcuccgcgCGCUG-CGGCGCC-Cg -3'
miRNA:   3'- auuUUUGCAca-----GCGACuGCCGCGGcG- -5'
6745 3' -52.7 NC_001875.2 + 31313 0.74 0.617446
Target:  5'- ---cAACcUGUCGCUGGCGGUgcaacaaaaauuuGCCGCc -3'
miRNA:   3'- auuuUUGcACAGCGACUGCCG-------------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 31522 0.71 0.800625
Target:  5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3'
miRNA:   3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.