miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 57675 0.74 0.659741
Target:  5'- -cAAAACGcGUCcaaGCUGGCggcggcgGGCGCCGCg -3'
miRNA:   3'- auUUUUGCaCAG---CGACUG-------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 131610 0.73 0.67133
Target:  5'- gAAAAACGUG-CGCaauuUGAUGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCACaGCG----ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 111781 0.73 0.67133
Target:  5'- ------gGUGUCGCuggUGACGGCGgUGCa -3'
miRNA:   3'- auuuuugCACAGCG---ACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 4427 0.73 0.68183
Target:  5'- ---cGGCGgcaUGCUGACGcGCGCCGCc -3'
miRNA:   3'- auuuUUGCacaGCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86911 0.73 0.68183
Target:  5'- cGAAAACGaggCGCUGAa-GCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGACUgcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 100057 0.73 0.692287
Target:  5'- -----uUGUGgaGCUGACGGUGCUGCu -3'
miRNA:   3'- auuuuuGCACagCGACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 41707 0.72 0.723294
Target:  5'- -cAGGGCGUaugcgcggCGCUGcGCGGCGUCGCa -3'
miRNA:   3'- auUUUUGCAca------GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 74094 0.72 0.723294
Target:  5'- aGGAGGCGUuUCGC-GACuacGCGCCGCg -3'
miRNA:   3'- aUUUUUGCAcAGCGaCUGc--CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 7563 0.72 0.723294
Target:  5'- cAAAGGCGgcggGUCGUcGACGaccaacGCGCCGCc -3'
miRNA:   3'- aUUUUUGCa---CAGCGaCUGC------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 36087 0.72 0.734489
Target:  5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3'
miRNA:   3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 24274 0.72 0.743564
Target:  5'- --cAAGCuUGU-GC-GACGGCGCCGCg -3'
miRNA:   3'- auuUUUGcACAgCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 99744 0.72 0.743564
Target:  5'- cGuuAACGUGaCGCUGugugcguuUGGCGCCGUu -3'
miRNA:   3'- aUuuUUGCACaGCGACu-------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 60109 0.72 0.753548
Target:  5'- --uAGACGUGUCGCUcguuuACGcUGCCGCa -3'
miRNA:   3'- auuUUUGCACAGCGAc----UGCcGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 89375 0.72 0.753548
Target:  5'- ----cGCGUGUUGCUGcguGGCucGCCGCa -3'
miRNA:   3'- auuuuUGCACAGCGACug-CCG--CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44462 0.72 0.753548
Target:  5'- ----cACGuUGUCGUUGGC-GCGCUGCg -3'
miRNA:   3'- auuuuUGC-ACAGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 94718 0.72 0.763417
Target:  5'- gAAAGACGcaaaCGCcgGcGCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCaca-GCGa-C-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 63952 0.72 0.763417
Target:  5'- gGAAGGCGcUGUCGCcGACcGCGCUGa -3'
miRNA:   3'- aUUUUUGC-ACAGCGaCUGcCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 113631 0.72 0.763417
Target:  5'- cAAGAGCG----GC-GACGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacagCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110159 0.72 0.763417
Target:  5'- -----cCGcGUCGCgcucgucgGGCGGCGUCGCa -3'
miRNA:   3'- auuuuuGCaCAGCGa-------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 83399 0.71 0.782772
Target:  5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3'
miRNA:   3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.