miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 71122 0.66 0.969977
Target:  5'- ------gGUGUUGCUGuggcuggGCGGCcucagcgcgGCCGCg -3'
miRNA:   3'- auuuuugCACAGCGAC-------UGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 55717 0.66 0.969977
Target:  5'- cAuuGACGUGgCGCUGgaaaaggagcgcuACGGCG-CGCc -3'
miRNA:   3'- aUuuUUGCACaGCGAC-------------UGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 95242 0.66 0.967163
Target:  5'- cAAGGGCGacgCGCagcGGCuGCGCCGCa -3'
miRNA:   3'- aUUUUUGCacaGCGa--CUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80629 0.66 0.967163
Target:  5'- -cGGAACGcG-CGCUcgacgGGCGGCGCCa- -3'
miRNA:   3'- auUUUUGCaCaGCGA-----CUGCCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 101173 0.66 0.967163
Target:  5'- ----cGCGUGgCGCUGGucaauuacgugcCGGCGCC-Ca -3'
miRNA:   3'- auuuuUGCACaGCGACU------------GCCGCGGcG- -5'
6745 3' -52.7 NC_001875.2 + 127287 0.66 0.967163
Target:  5'- -----uCGcGUUGCUGGCGGCccccaaaCCGCa -3'
miRNA:   3'- auuuuuGCaCAGCGACUGCCGc------GGCG- -5'
6745 3' -52.7 NC_001875.2 + 15565 0.66 0.967163
Target:  5'- aUAGAGGCG-GUCa-UG-CGGCGUCGCc -3'
miRNA:   3'- -AUUUUUGCaCAGcgACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80815 0.66 0.967163
Target:  5'- ----cACGUG--GCUG-UGGCGCCGUu -3'
miRNA:   3'- auuuuUGCACagCGACuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 70604 0.66 0.966185
Target:  5'- aAAAGACGgg-CGCUacauggccugccccGAacauuuguacgaCGGCGCCGCg -3'
miRNA:   3'- aUUUUUGCacaGCGA--------------CU------------GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 103439 0.66 0.963823
Target:  5'- -----cUGUGuUUGCUGgucuGCGGCGUCGUg -3'
miRNA:   3'- auuuuuGCAC-AGCGAC----UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 75415 0.66 0.963823
Target:  5'- gUGAugGCGUcggcGUUGgUGAUGGCGUCGg -3'
miRNA:   3'- -AUUuuUGCA----CAGCgACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 17099 0.66 0.963823
Target:  5'- gAAAAgcACGgucGUCGCUGAC-GCaCCGCc -3'
miRNA:   3'- aUUUU--UGCa--CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 103115 0.66 0.963823
Target:  5'- -----uCGUGgcUCGCuUGGCGGCgGCgGCg -3'
miRNA:   3'- auuuuuGCAC--AGCG-ACUGCCG-CGgCG- -5'
6745 3' -52.7 NC_001875.2 + 38786 0.66 0.960253
Target:  5'- gGAGAGCGcGccCGCaauuCGGCGCUGCa -3'
miRNA:   3'- aUUUUUGCaCa-GCGacu-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 101100 0.66 0.960253
Target:  5'- aUAAAAGCGggGUCGCcgcUGAC-GCaCCGCu -3'
miRNA:   3'- -AUUUUUGCa-CAGCG---ACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 118232 0.66 0.960253
Target:  5'- ----uGCGUGUUGUgccaaaacaauUGGCGG-GCUGCa -3'
miRNA:   3'- auuuuUGCACAGCG-----------ACUGCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 1739 0.66 0.960253
Target:  5'- gAAcgGCGUGU-GCUaGCGGUGCCucaGCg -3'
miRNA:   3'- aUUuuUGCACAgCGAcUGCCGCGG---CG- -5'
6745 3' -52.7 NC_001875.2 + 89272 0.66 0.956447
Target:  5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3'
miRNA:   3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 39171 0.66 0.956447
Target:  5'- -cGAGGCGggccggcgGUUGCgUGGCGuuuacgguGCGCCGCu -3'
miRNA:   3'- auUUUUGCa-------CAGCG-ACUGC--------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 69591 0.66 0.956447
Target:  5'- gGAGuACGUGUggCGCUuuacGCGGCGCgCGUc -3'
miRNA:   3'- aUUUuUGCACA--GCGAc---UGCCGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.