miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 89272 0.66 0.956447
Target:  5'- ----cGCGUG-CGCcGACcuGGCGCgGCu -3'
miRNA:   3'- auuuuUGCACaGCGaCUG--CCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 130209 0.66 0.956447
Target:  5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 32876 0.66 0.956447
Target:  5'- ---uAGCGU-UCGCUG-CaGCGCUGCa -3'
miRNA:   3'- auuuUUGCAcAGCGACuGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 39171 0.66 0.956447
Target:  5'- -cGAGGCGggccggcgGUUGCgUGGCGuuuacgguGCGCCGCu -3'
miRNA:   3'- auUUUUGCa-------CAGCG-ACUGC--------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 130143 0.66 0.956447
Target:  5'- gAAAAGCaggGUcGUCGCUGAC-GCaCCGCu -3'
miRNA:   3'- aUUUUUG---CA-CAGCGACUGcCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80603 0.66 0.956447
Target:  5'- aAAGAAUG-GUCGUcacgGugGGCG-CGCg -3'
miRNA:   3'- aUUUUUGCaCAGCGa---CugCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 72036 0.66 0.956054
Target:  5'- cGuuGACcagGUCGUUGACGuuuguaaGCGCUGCg -3'
miRNA:   3'- aUuuUUGca-CAGCGACUGC-------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 67620 0.66 0.955259
Target:  5'- cUAAGAGCGUG-CGCaagaagcuggaaauUGAacaGGCGCUGg -3'
miRNA:   3'- -AUUUUUGCACaGCG--------------ACUg--CCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 94011 0.67 0.952401
Target:  5'- ---cAGCGUGUCGUacgUGAUcgccaccgccuuGGCGUCGUc -3'
miRNA:   3'- auuuUUGCACAGCG---ACUG------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 43735 0.67 0.952401
Target:  5'- uUGGAAACGggcGUUgGCUGGCuuGGCuGCUGCg -3'
miRNA:   3'- -AUUUUUGCa--CAG-CGACUG--CCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 43575 0.67 0.952401
Target:  5'- ---cAGCGUcaUGCUGGCGGCGa-GCg -3'
miRNA:   3'- auuuUUGCAcaGCGACUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 47445 0.67 0.952401
Target:  5'- uUGAAucCGUGuacaUCGgUGAaauUGGUGCCGCa -3'
miRNA:   3'- -AUUUuuGCAC----AGCgACU---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88965 0.67 0.952401
Target:  5'- uUGAAcGCGUugCGCUGGCGgaccuGCGCCuGCg -3'
miRNA:   3'- -AUUUuUGCAcaGCGACUGC-----CGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 38554 0.67 0.948109
Target:  5'- -----cCGgGUUGCUGcguCGGCGCgGCg -3'
miRNA:   3'- auuuuuGCaCAGCGACu--GCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 271 0.67 0.948109
Target:  5'- -----uUGUaUUGCUGGCGuCGCCGCa -3'
miRNA:   3'- auuuuuGCAcAGCGACUGCcGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 100249 0.67 0.948109
Target:  5'- ----uGCuUGUCGCuauugUGugGGCGgCGCg -3'
miRNA:   3'- auuuuUGcACAGCG-----ACugCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 2728 0.67 0.948109
Target:  5'- --cAAGCGUucgucgucGUCGCUGucauugaaaGGCGCCaGCg -3'
miRNA:   3'- auuUUUGCA--------CAGCGACug-------CCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 40411 0.67 0.948109
Target:  5'- --cGGACGUgGUCaacaccgagggGCUGACGcGCGCCa- -3'
miRNA:   3'- auuUUUGCA-CAG-----------CGACUGC-CGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 48808 0.67 0.944033
Target:  5'- uUAAAAA-GUGcuaacaugcuccgcgCGCU-ACGGCGCCGCu -3'
miRNA:   3'- -AUUUUUgCACa--------------GCGAcUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54946 0.67 0.943568
Target:  5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.