miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 36871 0.67 0.943568
Target:  5'- aAAGAACGUcGUCGUgcgcGCGGCacaCCGCc -3'
miRNA:   3'- aUUUUUGCA-CAGCGac--UGCCGc--GGCG- -5'
6745 3' -52.7 NC_001875.2 + 67142 0.67 0.943568
Target:  5'- -----cCGUGUUGCUG-CGGCuGuCUGCg -3'
miRNA:   3'- auuuuuGCACAGCGACuGCCG-C-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 129139 0.67 0.943568
Target:  5'- -uGGAGCagGUGaUGCUGGagucugccgaGGCGCCGCa -3'
miRNA:   3'- auUUUUG--CACaGCGACUg---------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54946 0.67 0.943568
Target:  5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 115434 0.67 0.9431
Target:  5'- --cAAACGUGUCGCUGggacacaGCaGCuuGUCGCu -3'
miRNA:   3'- auuUUUGCACAGCGAC-------UGcCG--CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 127370 0.67 0.938776
Target:  5'- cUGAAAGCaUG-CGCgGACGGCGCUn- -3'
miRNA:   3'- -AUUUUUGcACaGCGaCUGCCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 111964 0.67 0.938776
Target:  5'- ----cGCGUuUCGCaaACGGCGcCCGCg -3'
miRNA:   3'- auuuuUGCAcAGCGacUGCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 46206 0.67 0.938776
Target:  5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3'
miRNA:   3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 17468 0.67 0.938776
Target:  5'- cGAGAugcACgGUGUUauggccagcaaGUUGGCGGaCGCCGCg -3'
miRNA:   3'- aUUUU---UG-CACAG-----------CGACUGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 109873 0.67 0.938776
Target:  5'- --cAAGC-UGgCGCUGGCGccgcccauccccGCGCCGCa -3'
miRNA:   3'- auuUUUGcACaGCGACUGC------------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 9708 0.67 0.93373
Target:  5'- -----uCGUGcgCGCcGGCcGCGCCGCg -3'
miRNA:   3'- auuuuuGCACa-GCGaCUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5971 0.67 0.93373
Target:  5'- --uGAAUGUgGUCGCcGACGGCagGCCcaGCg -3'
miRNA:   3'- auuUUUGCA-CAGCGaCUGCCG--CGG--CG- -5'
6745 3' -52.7 NC_001875.2 + 62623 0.67 0.932166
Target:  5'- ----cGCGcGUCGCccgaacaagcguacUGGCcgucGGCGCCGCg -3'
miRNA:   3'- auuuuUGCaCAGCG--------------ACUG----CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 73604 0.68 0.928429
Target:  5'- --cGAGCGccaacUGUUGC-GGCGGCgGCUGCg -3'
miRNA:   3'- auuUUUGC-----ACAGCGaCUGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 106099 0.68 0.928429
Target:  5'- cGAAGACGUGUUGCgUGuGCuuCGCUGCa -3'
miRNA:   3'- aUUUUUGCACAGCG-AC-UGccGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 125058 0.68 0.928429
Target:  5'- ----uGCGgGUCGCUGAUGcccugaaacaCGCCGCg -3'
miRNA:   3'- auuuuUGCaCAGCGACUGCc---------GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 12756 0.68 0.927885
Target:  5'- cGAAAugGguggcgGUUGUUGuccagccGgGGCGCCGCg -3'
miRNA:   3'- aUUUUugCa-----CAGCGAC-------UgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 97931 0.68 0.926789
Target:  5'- ---cAACGUGUCGCUGcACcaaaccgaccccgaGGCGCUa- -3'
miRNA:   3'- auuuUUGCACAGCGAC-UG--------------CCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 110888 0.68 0.922873
Target:  5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3'
miRNA:   3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 90880 0.68 0.922873
Target:  5'- --cGAACGU---GCUGGcCGGgGCCGCg -3'
miRNA:   3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.