miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 31589 0.66 0.973177
Target:  5'- aAGGGugGUGUC-----CGGCGCCGUg -3'
miRNA:   3'- aUUUUugCACAGcgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 32772 0.68 0.917061
Target:  5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3'
miRNA:   3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 32876 0.66 0.956447
Target:  5'- ---uAGCGU-UCGCUG-CaGCGCUGCa -3'
miRNA:   3'- auuuUUGCAcAGCGACuGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 33030 0.68 0.917061
Target:  5'- --uAAGCGcagCGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuUUUGCacaGCGaCUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 33061 0.69 0.894047
Target:  5'- gGAuAGCGUuccgCGCggcuccagacuuugaUGGCGGCGCCGUc -3'
miRNA:   3'- aUUuUUGCAca--GCG---------------ACUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 34161 0.69 0.884231
Target:  5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3'
miRNA:   3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 36087 0.72 0.734489
Target:  5'- -cAAGACGcGcUCGCgcggcagcacgcggcGGCGGCGCCGCu -3'
miRNA:   3'- auUUUUGCaC-AGCGa--------------CUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 36412 0.74 0.650237
Target:  5'- ----cGCGca-CGCUGGcCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCacaGCGACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 36871 0.67 0.943568
Target:  5'- aAAGAACGUcGUCGUgcgcGCGGCacaCCGCc -3'
miRNA:   3'- aUUUUUGCA-CAGCGac--UGCCGc--GGCG- -5'
6745 3' -52.7 NC_001875.2 + 37102 0.74 0.639663
Target:  5'- ----cGCGUGggugUGCgggcGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCACa---GCGac--UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 38554 0.67 0.948109
Target:  5'- -----cCGgGUUGCUGcguCGGCGCgGCg -3'
miRNA:   3'- auuuuuGCaCAGCGACu--GCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 38786 0.66 0.960253
Target:  5'- gGAGAGCGcGccCGCaauuCGGCGCUGCa -3'
miRNA:   3'- aUUUUUGCaCa-GCGacu-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 39171 0.66 0.956447
Target:  5'- -cGAGGCGggccggcgGUUGCgUGGCGuuuacgguGCGCCGCu -3'
miRNA:   3'- auUUUUGCa-------CAGCG-ACUGC--------CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 40266 0.7 0.853661
Target:  5'- cUGAAAACG-GUCGCguuuccguacgUGGCGGCgggcaacggGCUGCa -3'
miRNA:   3'- -AUUUUUGCaCAGCG-----------ACUGCCG---------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 40411 0.67 0.948109
Target:  5'- --cGGACGUgGUCaacaccgagggGCUGACGcGCGCCa- -3'
miRNA:   3'- auuUUUGCA-CAG-----------CGACUGC-CGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 41126 0.74 0.618504
Target:  5'- -----uCGUGUCGCgcuUGAcCGGCGgCCGCg -3'
miRNA:   3'- auuuuuGCACAGCG---ACU-GCCGC-GGCG- -5'
6745 3' -52.7 NC_001875.2 + 41707 0.72 0.723294
Target:  5'- -cAGGGCGUaugcgcggCGCUGcGCGGCGUCGCa -3'
miRNA:   3'- auUUUUGCAca------GCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 43575 0.67 0.952401
Target:  5'- ---cAGCGUcaUGCUGGCGGCGa-GCg -3'
miRNA:   3'- auuuUUGCAcaGCGACUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 43735 0.67 0.952401
Target:  5'- uUGGAAACGggcGUUgGCUGGCuuGGCuGCUGCg -3'
miRNA:   3'- -AUUUUUGCa--CAG-CGACUG--CCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44428 0.7 0.833647
Target:  5'- -uGGGGCG-GUCGUUGAacgcgaucagcaaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCaCAGCGACUg------------CCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.