miRNA display CGI


Results 61 - 80 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 48231 0.66 0.818884
Target:  5'- aGCGCGUCaauugcuGCaaGUugAGCuACGgCGGCg -3'
miRNA:   3'- -CGCGCAG-------CGcgCGugUCGuUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 36198 0.66 0.828177
Target:  5'- uUGuCGUCGUccaCGCAaauUAGCAGCACGuGCg -3'
miRNA:   3'- cGC-GCAGCGc--GCGU---GUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 52649 0.66 0.819737
Target:  5'- uGUGCG--GCGCGgACAuuuaccaCAACACGGCc -3'
miRNA:   3'- -CGCGCagCGCGCgUGUc------GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 71107 0.66 0.83644
Target:  5'- aCuCGUCGUGCGUuugguguuGCuGUGGCugGGCg -3'
miRNA:   3'- cGcGCAGCGCGCG--------UGuCGUUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 110868 0.66 0.819737
Target:  5'- uUGCGcUGCGgGCAUuGCGACGCGuuuGCg -3'
miRNA:   3'- cGCGCaGCGCgCGUGuCGUUGUGC---CG- -5'
6745 5' -57.7 NC_001875.2 + 66809 0.66 0.83644
Target:  5'- uGCGCGUacgccggcaGCGaGUugAGCAcaaACgACGGCu -3'
miRNA:   3'- -CGCGCAg--------CGCgCGugUCGU---UG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79093 0.66 0.818884
Target:  5'- -gGCGUaGUGCGCAUaaaacuuGGC--CACGGCg -3'
miRNA:   3'- cgCGCAgCGCGCGUG-------UCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 97882 0.66 0.828177
Target:  5'- uGCGCGcCGCacGgGCACGuuGCGgGCGuCGGCg -3'
miRNA:   3'- -CGCGCaGCG--CgCGUGU--CGU-UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 88889 0.66 0.819737
Target:  5'- gGCGCGcUGCGCGgGCuGCugacGCACGcCa -3'
miRNA:   3'- -CGCGCaGCGCGCgUGuCGu---UGUGCcG- -5'
6745 5' -57.7 NC_001875.2 + 118300 0.66 0.819737
Target:  5'- uGCaGC-UgGCGCGCuu-GCAACaACGGCu -3'
miRNA:   3'- -CG-CGcAgCGCGCGuguCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 41120 0.66 0.83644
Target:  5'- -gGCGUCGUGUGC-CAGC---GCGuGCc -3'
miRNA:   3'- cgCGCAGCGCGCGuGUCGuugUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 33561 0.66 0.831503
Target:  5'- aGUGCgGUCGcCGCGgGgcaccaugcccgaguCGGCGACGUGGCg -3'
miRNA:   3'- -CGCG-CAGC-GCGCgU---------------GUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 114200 0.66 0.819737
Target:  5'- cGCGCGaUUGCGCaaGUugGGCggUACGu- -3'
miRNA:   3'- -CGCGC-AGCGCG--CGugUCGuuGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 95356 0.66 0.844521
Target:  5'- gGCGCacgUGCaCGCGuCGGCGGaaaACGGCg -3'
miRNA:   3'- -CGCGca-GCGcGCGU-GUCGUUg--UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 67595 0.66 0.844521
Target:  5'- aGCcCGUCgGUGUGCACcGUuuggaacguGCGCGGCu -3'
miRNA:   3'- -CGcGCAG-CGCGCGUGuCGu--------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 26554 0.66 0.84292
Target:  5'- gGCGUGcuggcagauuUC-CGUGCACAGauugagcguuuGCACGGCg -3'
miRNA:   3'- -CGCGC----------AGcGCGCGUGUCgu---------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 110585 0.66 0.844521
Target:  5'- cCGCGcCGCGCGCGCgccuggaccAGCuuCGCcaacuGGUg -3'
miRNA:   3'- cGCGCaGCGCGCGUG---------UCGuuGUG-----CCG- -5'
6745 5' -57.7 NC_001875.2 + 9635 0.66 0.802364
Target:  5'- uGCGUG-CGCGCGC-CGuGCGuguuuCGCGaGCu -3'
miRNA:   3'- -CGCGCaGCGCGCGuGU-CGUu----GUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 82300 0.66 0.828177
Target:  5'- -gGCGUCGgGCcccaaguccaGCAcCAGCGACuggucGCGGUc -3'
miRNA:   3'- cgCGCAGCgCG----------CGU-GUCGUUG-----UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 70204 0.66 0.835622
Target:  5'- gGCGUGUCGCGgGCcacguuagcgauCAGUucucgccaagccagcGCGCGGUg -3'
miRNA:   3'- -CGCGCAGCGCgCGu-----------GUCGu--------------UGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.