miRNA display CGI


Results 41 - 60 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 5513 0.66 0.819737
Target:  5'- -gGCG-CaCGCGCGCAGUuuACGcCGGCc -3'
miRNA:   3'- cgCGCaGcGCGCGUGUCGu-UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 42306 0.66 0.828177
Target:  5'- gGCGCcaaGUacagaucgaGCGCGCcCAGCGGCcccaGGCg -3'
miRNA:   3'- -CGCG---CAg--------CGCGCGuGUCGUUGug--CCG- -5'
6745 5' -57.7 NC_001875.2 + 114200 0.66 0.819737
Target:  5'- cGCGCGaUUGCGCaaGUugGGCggUACGu- -3'
miRNA:   3'- -CGCGC-AGCGCG--CGugUCGuuGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 10461 0.66 0.83644
Target:  5'- nCGCGgcgGCGCGCuCAGUGA-AUGGCg -3'
miRNA:   3'- cGCGCag-CGCGCGuGUCGUUgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 48231 0.66 0.818884
Target:  5'- aGCGCGUCaauugcuGCaaGUugAGCuACGgCGGCg -3'
miRNA:   3'- -CGCGCAG-------CGcgCGugUCGuUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 77253 0.66 0.811131
Target:  5'- -aGCcUCGCGCaaaGCAGCGAUuCGGUg -3'
miRNA:   3'- cgCGcAGCGCGcg-UGUCGUUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 39930 0.66 0.811131
Target:  5'- -aGCGgccUGCGCGCAauuuGCG-CGCGGUu -3'
miRNA:   3'- cgCGCa--GCGCGCGUgu--CGUuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 110868 0.66 0.819737
Target:  5'- uUGCGcUGCGgGCAUuGCGACGCGuuuGCg -3'
miRNA:   3'- cGCGCaGCGCgCGUGuCGUUGUGC---CG- -5'
6745 5' -57.7 NC_001875.2 + 107835 0.66 0.811131
Target:  5'- cGCGCccgGUGCGCcuuGCGACGCGcGCg -3'
miRNA:   3'- -CGCGcagCGCGCGuguCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 120808 0.66 0.83644
Target:  5'- aGCGCaaaCG-GCGCAgCAGCAACGacgagGGCu -3'
miRNA:   3'- -CGCGca-GCgCGCGU-GUCGUUGUg----CCG- -5'
6745 5' -57.7 NC_001875.2 + 36198 0.66 0.828177
Target:  5'- uUGuCGUCGUccaCGCAaauUAGCAGCACGuGCg -3'
miRNA:   3'- cGC-GCAGCGc--GCGU---GUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 2666 0.66 0.811131
Target:  5'- gGCGCcggCG-GCGCcuGgGGCAACuGCGGCg -3'
miRNA:   3'- -CGCGca-GCgCGCG--UgUCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 46944 0.66 0.802364
Target:  5'- uGCGCuacgccaagGUUGUGCugcuGCAgGGCGAgACGGUg -3'
miRNA:   3'- -CGCG---------CAGCGCG----CGUgUCGUUgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 97882 0.66 0.828177
Target:  5'- uGCGCGcCGCacGgGCACGuuGCGgGCGuCGGCg -3'
miRNA:   3'- -CGCGCaGCG--CgCGUGU--CGU-UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 32877 0.66 0.811131
Target:  5'- -aGCGuUCGCuGCaGCGCuGCAA-ACGGCu -3'
miRNA:   3'- cgCGC-AGCG-CG-CGUGuCGUUgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 75588 0.66 0.802364
Target:  5'- -gGCGUCG-GCGU-CGGCGAUggcguCGGCg -3'
miRNA:   3'- cgCGCAGCgCGCGuGUCGUUGu----GCCG- -5'
6745 5' -57.7 NC_001875.2 + 88721 0.66 0.83644
Target:  5'- gGCGCa-UGCGCGCcgAGUuuaacgAGCACGGCc -3'
miRNA:   3'- -CGCGcaGCGCGCGugUCG------UUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 22584 0.66 0.802364
Target:  5'- gGCGCGgCGCGUuggccgGC-CGGCugUACGGUu -3'
miRNA:   3'- -CGCGCaGCGCG------CGuGUCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 61800 0.66 0.811131
Target:  5'- cGUcCGUCGCagcgacCGCACAaucaauGcCAACACGGCg -3'
miRNA:   3'- -CGcGCAGCGc-----GCGUGU------C-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 121893 0.66 0.828177
Target:  5'- aCGCuGUCGuCGaCGCGCAGau-CGgGGCa -3'
miRNA:   3'- cGCG-CAGC-GC-GCGUGUCguuGUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.