miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 65727 0.76 0.46685
Target:  5'- gCGGCGCCgccucGCCGCCCGccgcGCGGGCCu -3'
miRNA:   3'- aGUUGCGG-----CGGCGGGUuu--UGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 31600 0.76 0.438716
Target:  5'- cCGGCGCCG-UGCCguGGGCGGACCAc -3'
miRNA:   3'- aGUUGCGGCgGCGGguUUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 70225 0.77 0.402765
Target:  5'- -aGGCGCCGCCgacacaGCCCGAAGCGccGCCGg -3'
miRNA:   3'- agUUGCGGCGG------CGGGUUUUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 128715 0.78 0.35168
Target:  5'- gCAGCGggcuUCGCCGCCCAGGucugcgcGCGAGCCGc -3'
miRNA:   3'- aGUUGC----GGCGGCGGGUUU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 20651 0.78 0.336735
Target:  5'- aCGGCGCgCGCCGCCCAGcGCGc-CCAa -3'
miRNA:   3'- aGUUGCG-GCGGCGGGUUuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 111905 0.73 0.607987
Target:  5'- --cGCGCCgGCCGCuCCGuguACGGGCCGg -3'
miRNA:   3'- aguUGCGG-CGGCG-GGUuu-UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 110503 0.72 0.649801
Target:  5'- aCGGCGCUGCuCGUCaaCAAGGCGGGCCc -3'
miRNA:   3'- aGUUGCGGCG-GCGG--GUUUUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 13648 0.71 0.742111
Target:  5'- --cGCGCCGCCGCUCAacacAAAC-AGCCc -3'
miRNA:   3'- aguUGCGGCGGCGGGU----UUUGcUUGGu -5'
6746 3' -54.1 NC_001875.2 + 61889 0.71 0.742111
Target:  5'- gUUuuCGCCGUgGCCCGAcACGcGCCGu -3'
miRNA:   3'- -AGuuGCGGCGgCGGGUUuUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 128886 0.71 0.732126
Target:  5'- gUCGACaCCGCUGCCgAgcAAGCGcGCCAg -3'
miRNA:   3'- -AGUUGcGGCGGCGGgU--UUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 82499 0.71 0.72205
Target:  5'- aCGGC-CCGCCGCCCAcgcugcagGAACuguGCCAg -3'
miRNA:   3'- aGUUGcGGCGGCGGGU--------UUUGcu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 77586 0.71 0.72205
Target:  5'- -gGACuGCCGCCGgCUAAAAUG-ACCAa -3'
miRNA:   3'- agUUG-CGGCGGCgGGUUUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 27731 0.71 0.720025
Target:  5'- gCAACGCguugcaaauaugGCCGCCCAAAuACGGGCUg -3'
miRNA:   3'- aGUUGCGg-----------CGGCGGGUUU-UGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 120743 0.71 0.711893
Target:  5'- gCGugGCCGCagaGCCCAAAcguccaaccGCGAagugcucgucGCCAa -3'
miRNA:   3'- aGUugCGGCGg--CGGGUUU---------UGCU----------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 38566 0.71 0.709853
Target:  5'- gUCGGCGCgGCgUGCCCAuccugcucuacACGGGCCAg -3'
miRNA:   3'- -AGUUGCGgCG-GCGGGUuu---------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 42453 0.72 0.691377
Target:  5'- gUCAGCgGCCGCUGC----GGCGAGCCAc -3'
miRNA:   3'- -AGUUG-CGGCGGCGgguuUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 33453 0.72 0.681037
Target:  5'- uUCAGCGCgGCCGgCCAGuggucgaaaguGGCGcGCCGc -3'
miRNA:   3'- -AGUUGCGgCGGCgGGUU-----------UUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 48837 0.72 0.66024
Target:  5'- aCGGCGCCGCUucaaGCCCGccggcGACGAGCg- -3'
miRNA:   3'- aGUUGCGGCGG----CGGGUu----UUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 33169 0.72 0.66024
Target:  5'- --cGCGCUGCCGCUCGAGGCacACCu -3'
miRNA:   3'- aguUGCGGCGGCGGGUUUUGcuUGGu -5'
6746 3' -54.1 NC_001875.2 + 10393 0.72 0.66024
Target:  5'- -gAACGCCGCCGCgCCGuggcGCGGcACCc -3'
miRNA:   3'- agUUGCGGCGGCG-GGUuu--UGCU-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.