miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 56372 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 126103 0.66 0.941475
Target:  5'- -aAGCGCCGCguCGCCaucAACG-ACCAc -3'
miRNA:   3'- agUUGCGGCG--GCGGguuUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 91202 0.66 0.941475
Target:  5'- cCGGCGCgUGCgCGCCCAGu-UGAGCUu -3'
miRNA:   3'- aGUUGCG-GCG-GCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 19049 0.66 0.936628
Target:  5'- -uGugGCCG-CGCUCGAggUGAACUc -3'
miRNA:   3'- agUugCGGCgGCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 18214 0.66 0.945175
Target:  5'- gCGGCGCCGUCGCCgCucuugccgccGCGGcccGCCGc -3'
miRNA:   3'- aGUUGCGGCGGCGG-Guuu-------UGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 88859 0.66 0.941946
Target:  5'- gCAACgGCCGCCGCCUuucaaagcauuguuGGCGcGCUg -3'
miRNA:   3'- aGUUG-CGGCGGCGGGuu------------UUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 56450 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 118826 0.66 0.936628
Target:  5'- gCAAaGCUGCCGCgCGAAGCGuACg- -3'
miRNA:   3'- aGUUgCGGCGGCGgGUUUUGCuUGgu -5'
6746 3' -54.1 NC_001875.2 + 97929 0.66 0.941475
Target:  5'- cUCAACGUguCGCUGCaCCAAAcCGAcCCc -3'
miRNA:   3'- -AGUUGCG--GCGGCG-GGUUUuGCUuGGu -5'
6746 3' -54.1 NC_001875.2 + 54575 0.66 0.941475
Target:  5'- gCGGCgGCCGCuuCGCCCGGcGGCGcGCCc -3'
miRNA:   3'- aGUUG-CGGCG--GCGGGUU-UUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 56222 0.66 0.926188
Target:  5'- cCAACGCCGaCGCCaacgcCGAcGCCAa -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56402 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 17823 0.66 0.931533
Target:  5'- aCcGCGCgGCCGCCaugcGCGAgggcGCCGa -3'
miRNA:   3'- aGuUGCGgCGGCGGguuuUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56330 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 103942 0.67 0.908036
Target:  5'- aCGGCGUCGUCGCCgAuggccagcacggcGAACGA-CCGc -3'
miRNA:   3'- aGUUGCGGCGGCGGgU-------------UUUGCUuGGU- -5'
6746 3' -54.1 NC_001875.2 + 101021 0.67 0.902321
Target:  5'- aCAACcuguuuGCCGCCGCgCAAAcuugcuuUGAACCGc -3'
miRNA:   3'- aGUUG------CGGCGGCGgGUUUu------GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 87738 0.67 0.914751
Target:  5'- aCAAC-UCGCCGCCaccuguGAGCGAACa- -3'
miRNA:   3'- aGUUGcGGCGGCGGgu----UUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 100323 0.67 0.904886
Target:  5'- uUCAACGacCCGCCGCCUucguuugcuucggugGAAAUGGAUUu -3'
miRNA:   3'- -AGUUGC--GGCGGCGGG---------------UUUUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 23280 0.67 0.902321
Target:  5'- cCAGCaCCGCCGCgCCGuAAAUGuccACCAu -3'
miRNA:   3'- aGUUGcGGCGGCG-GGU-UUUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 57701 0.67 0.902321
Target:  5'- -gGGCGCCG-CGCCCu---CGAACUc -3'
miRNA:   3'- agUUGCGGCgGCGGGuuuuGCUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.