miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 85210 0.66 0.924536
Target:  5'- cCGACggGCCGCCGCgCGGuagcgccgcaugucGACGAGCgCGg -3'
miRNA:   3'- aGUUG--CGGCGGCGgGUU--------------UUGCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 108200 0.66 0.931533
Target:  5'- -gGACGCCGuuGCgaAAAACGGcaaaaaaauuGCCAa -3'
miRNA:   3'- agUUGCGGCggCGggUUUUGCU----------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 120744 0.66 0.926188
Target:  5'- gCGGCGCCgagacgggGCCGUguCCAGGGCGcgcGCCAc -3'
miRNA:   3'- aGUUGCGG--------CGGCG--GGUUUUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 88251 0.66 0.945626
Target:  5'- --cGCGCCGCCGCugCCGccguacucgucAGACGAagaagacGCCGc -3'
miRNA:   3'- aguUGCGGCGGCG--GGU-----------UUUGCU-------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 17823 0.66 0.931533
Target:  5'- aCcGCGCgGCCGCCaugcGCGAgggcGCCGa -3'
miRNA:   3'- aGuUGCGgCGGCGGguuuUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 72365 0.66 0.936628
Target:  5'- gCAA-GCUGuuGCUCcAGACGAGCCc -3'
miRNA:   3'- aGUUgCGGCggCGGGuUUUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 52755 0.66 0.946075
Target:  5'- --cGCGCUGCCGUCCGAGuacuuguuuccCGAGCa- -3'
miRNA:   3'- aguUGCGGCGGCGGGUUUu----------GCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 19049 0.66 0.936628
Target:  5'- -uGugGCCG-CGCUCGAggUGAACUc -3'
miRNA:   3'- agUugCGGCgGCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 47404 0.66 0.926188
Target:  5'- cCGcCGCCGCCGCUCc---CGAuccGCCGa -3'
miRNA:   3'- aGUuGCGGCGGCGGGuuuuGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56222 0.66 0.926188
Target:  5'- cCAACGCCGaCGCCaacgcCGAcGCCAa -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 27692 0.66 0.92564
Target:  5'- cCAucGCGCCGCCGUuuGAgccgcacAACGAGgCGa -3'
miRNA:   3'- aGU--UGCGGCGGCGggUU-------UUGCUUgGU- -5'
6746 3' -54.1 NC_001875.2 + 61211 0.66 0.926188
Target:  5'- gCGGCGCCGUCGUacaaauguUCGGGGCaGGCCAu -3'
miRNA:   3'- aGUUGCGGCGGCG--------GGUUUUGcUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 15089 0.66 0.936628
Target:  5'- cCAGCaGCUGcCCGCCaucAggUGGGCCAg -3'
miRNA:   3'- aGUUG-CGGC-GGCGGgu-UuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 32824 0.66 0.936628
Target:  5'- aCGGCGCCGCUugcgagcgugGCaCCAAAACcugguGCCGu -3'
miRNA:   3'- aGUUGCGGCGG----------CG-GGUUUUGcu---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 67623 0.66 0.936628
Target:  5'- --uGCGCgGCUgacuGCCCGGGugGAACuCAa -3'
miRNA:   3'- aguUGCGgCGG----CGGGUUUugCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 8549 0.66 0.92564
Target:  5'- cCAAUGUuugcaggCGCUGCUCAAAuugcuCGAACCGg -3'
miRNA:   3'- aGUUGCG-------GCGGCGGGUUUu----GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 1884 0.66 0.93101
Target:  5'- cCGcCGCCGCCGCCgCcAAugGuagauuuGGCCAc -3'
miRNA:   3'- aGUuGCGGCGGCGG-GuUUugC-------UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 68162 0.66 0.926188
Target:  5'- -gAACGCugcgCGCCGCgCAAGACGAuuaCAc -3'
miRNA:   3'- agUUGCG----GCGGCGgGUUUUGCUug-GU- -5'
6746 3' -54.1 NC_001875.2 + 22728 0.66 0.93101
Target:  5'- cCGcCGUCGCCGCCUAuacccucAAugGcGGCCAg -3'
miRNA:   3'- aGUuGCGGCGGCGGGU-------UUugC-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 127565 0.66 0.926188
Target:  5'- aUCGgcGCGCUGCUGCacuuuuaCAGGAUGGacGCCAa -3'
miRNA:   3'- -AGU--UGCGGCGGCGg------GUUUUGCU--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.