miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 29426 0.75 0.525713
Target:  5'- cUCGuCGCCGCgGCCCAAGuaguaGAACCc -3'
miRNA:   3'- -AGUuGCGGCGgCGGGUUUug---CUUGGu -5'
6746 3' -54.1 NC_001875.2 + 95739 0.75 0.525713
Target:  5'- gCGGCGCCGCCGCCgCGugcugccgcGCGAGCg- -3'
miRNA:   3'- aGUUGCGGCGGCGG-GUuu-------UGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 110762 0.74 0.535807
Target:  5'- gCGAcCGCCGCCgcgcgcuuuuGCCCAAAACGccgccGACCAc -3'
miRNA:   3'- aGUU-GCGGCGG----------CGGGUUUUGC-----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 59210 0.74 0.535807
Target:  5'- aCAGCagGCCGCCGCCgAuuACGucGCCAa -3'
miRNA:   3'- aGUUG--CGGCGGCGGgUuuUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 65865 0.74 0.566468
Target:  5'- aUCAAaGaCCGCgGCCCAAAugGAauACCAu -3'
miRNA:   3'- -AGUUgC-GGCGgCGGGUUUugCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 54660 0.74 0.576793
Target:  5'- -gAACGCCGUCGCCguuguCGGGCCAg -3'
miRNA:   3'- agUUGCGGCGGCGGguuuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 110503 0.74 0.576793
Target:  5'- uUCAA-GCaCGUCGCCCAGGuggccGCGGGCCAc -3'
miRNA:   3'- -AGUUgCG-GCGGCGGGUUU-----UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 55824 0.74 0.576793
Target:  5'- -aGGgGCCGCCGa-CGAAACGGGCCAg -3'
miRNA:   3'- agUUgCGGCGGCggGUUUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 26610 0.73 0.586121
Target:  5'- -uGGCGCCaugacagGCCGCCCAAgcauGACGAgggcGCCAc -3'
miRNA:   3'- agUUGCGG-------CGGCGGGUU----UUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 87491 0.73 0.58716
Target:  5'- --cGCGaCCGCUGCCCGAu-CGAGCUAa -3'
miRNA:   3'- aguUGC-GGCGGCGGGUUuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 86919 0.73 0.59756
Target:  5'- -aGGCGCugaagCGCCGCCUAGAgugcgaggGCGAGCCGc -3'
miRNA:   3'- agUUGCG-----GCGGCGGGUUU--------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 111905 0.73 0.607987
Target:  5'- --cGCGCCgGCCGCuCCGuguACGGGCCGg -3'
miRNA:   3'- aguUGCGG-CGGCG-GGUuu-UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 29928 0.73 0.607987
Target:  5'- uUCGACGCCGCCGU--AAAGCG-GCCu -3'
miRNA:   3'- -AGUUGCGGCGGCGggUUUUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 101893 0.73 0.607987
Target:  5'- aCAGCGCCGUCGCCUucGGCu-GCCu -3'
miRNA:   3'- aGUUGCGGCGGCGGGuuUUGcuUGGu -5'
6746 3' -54.1 NC_001875.2 + 98603 0.73 0.618432
Target:  5'- -gAGCGCCGCgccgaaacggCGCCCG--GCGAGCCc -3'
miRNA:   3'- agUUGCGGCG----------GCGGGUuuUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 99845 0.73 0.628889
Target:  5'- gCGuCGCCGCCGCUCAcAAACcGGCCGu -3'
miRNA:   3'- aGUuGCGGCGGCGGGU-UUUGcUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 52722 0.73 0.628889
Target:  5'- gCGGCGcCCGCCGCCgAcAACGccguGGCCAa -3'
miRNA:   3'- aGUUGC-GGCGGCGGgUuUUGC----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 57535 0.73 0.639348
Target:  5'- cCGGCGCCuGCgCGCCguAGGCGAugCGc -3'
miRNA:   3'- aGUUGCGG-CG-GCGGguUUUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 61654 0.73 0.639348
Target:  5'- gUCGcCGUCGCCGCCCGGcuCGcugcGCCAa -3'
miRNA:   3'- -AGUuGCGGCGGCGGGUUuuGCu---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 110503 0.72 0.649801
Target:  5'- aCGGCGCUGCuCGUCaaCAAGGCGGGCCc -3'
miRNA:   3'- aGUUGCGGCG-GCGG--GUUUUGCUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.