miRNA display CGI


Results 21 - 40 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 56330 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 67623 0.66 0.936628
Target:  5'- --uGCGCgGCUgacuGCCCGGGugGAACuCAa -3'
miRNA:   3'- aguUGCGgCGG----CGGGUUUugCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 118826 0.66 0.936628
Target:  5'- gCAAaGCUGCCGCgCGAAGCGuACg- -3'
miRNA:   3'- aGUUgCGGCGGCGgGUUUUGCuUGgu -5'
6746 3' -54.1 NC_001875.2 + 56372 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56450 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56552 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56492 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 56402 0.66 0.936628
Target:  5'- cCAACGCCGaCGCCaucgcCGAcGCCAu -3'
miRNA:   3'- aGUUGCGGCgGCGGguuuuGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 19049 0.66 0.936628
Target:  5'- -uGugGCCG-CGCUCGAggUGAACUc -3'
miRNA:   3'- agUugCGGCgGCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 15089 0.66 0.936628
Target:  5'- cCAGCaGCUGcCCGCCaucAggUGGGCCAg -3'
miRNA:   3'- aGUUG-CGGC-GGCGGgu-UuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 17823 0.66 0.931533
Target:  5'- aCcGCGCgGCCGCCaugcGCGAgggcGCCGa -3'
miRNA:   3'- aGuUGCGgCGGCGGguuuUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 47992 0.66 0.931533
Target:  5'- -gGGCGUCgaGCCGCCCug---GAACCAg -3'
miRNA:   3'- agUUGCGG--CGGCGGGuuuugCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 51137 0.66 0.931533
Target:  5'- uUCGACGCUGUCGUUCAAccggucGCGuuCCAa -3'
miRNA:   3'- -AGUUGCGGCGGCGGGUUu-----UGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 109267 0.66 0.931533
Target:  5'- cCAACG-CGCCGCgCCcGGGCGuuaaAACCGa -3'
miRNA:   3'- aGUUGCgGCGGCG-GGuUUUGC----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 108200 0.66 0.931533
Target:  5'- -gGACGCCGuuGCgaAAAACGGcaaaaaaauuGCCAa -3'
miRNA:   3'- agUUGCGGCggCGggUUUUGCU----------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 1884 0.66 0.93101
Target:  5'- cCGcCGCCGCCGCCgCcAAugGuagauuuGGCCAc -3'
miRNA:   3'- aGUuGCGGCGGCGG-GuUUugC-------UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 22728 0.66 0.93101
Target:  5'- cCGcCGUCGCCGCCUAuacccucAAugGcGGCCAg -3'
miRNA:   3'- aGUuGCGGCGGCGGGU-------UUugC-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 68162 0.66 0.926188
Target:  5'- -gAACGCugcgCGCCGCgCAAGACGAuuaCAc -3'
miRNA:   3'- agUUGCG----GCGGCGgGUUUUGCUug-GU- -5'
6746 3' -54.1 NC_001875.2 + 47404 0.66 0.926188
Target:  5'- cCGcCGCCGCCGCUCc---CGAuccGCCGa -3'
miRNA:   3'- aGUuGCGGCGGCGGGuuuuGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 125174 0.66 0.926188
Target:  5'- cUCGAagcgGCCGuuGCCCAGAuugcGCGuGCUg -3'
miRNA:   3'- -AGUUg---CGGCggCGGGUUU----UGCuUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.