miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 12843 0.67 0.89574
Target:  5'- cCGGCGgCGCCGgCUAGcACGcAGCCGu -3'
miRNA:   3'- aGUUGCgGCGGCgGGUUuUGC-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 13648 0.71 0.742111
Target:  5'- --cGCGCCGCCGCUCAacacAAAC-AGCCc -3'
miRNA:   3'- aguUGCGGCGGCGGGU----UUUGcUUGGu -5'
6746 3' -54.1 NC_001875.2 + 14972 0.68 0.881861
Target:  5'- ---gUGCCGUCGCCCAAcACGc-CCGa -3'
miRNA:   3'- aguuGCGGCGGCGGGUUuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 15089 0.66 0.936628
Target:  5'- cCAGCaGCUGcCCGCCaucAggUGGGCCAg -3'
miRNA:   3'- aGUUG-CGGC-GGCGGgu-UuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 17823 0.66 0.931533
Target:  5'- aCcGCGCgGCCGCCaugcGCGAgggcGCCGa -3'
miRNA:   3'- aGuUGCGgCGGCGGguuuUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 18049 0.68 0.859319
Target:  5'- uUCAACgaggcguacuGCCGCCGCUUcgGGCGcGACCu -3'
miRNA:   3'- -AGUUG----------CGGCGGCGGGuuUUGC-UUGGu -5'
6746 3' -54.1 NC_001875.2 + 18214 0.66 0.945175
Target:  5'- gCGGCGCCGUCGCCgCucuugccgccGCGGcccGCCGc -3'
miRNA:   3'- aGUUGCGGCGGCGG-Guuu-------UGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 18258 0.67 0.89574
Target:  5'- -gAACGCCGUgcugGCCCAAuGGCGcGCCGu -3'
miRNA:   3'- agUUGCGGCGg---CGGGUU-UUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 19049 0.66 0.936628
Target:  5'- -uGugGCCG-CGCUCGAggUGAACUc -3'
miRNA:   3'- agUugCGGCgGCGGGUUuuGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 20222 0.7 0.790337
Target:  5'- cCGAauCCGCCGCUCGAggUGAACa- -3'
miRNA:   3'- aGUUgcGGCGGCGGGUUuuGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 20651 0.78 0.336735
Target:  5'- aCGGCGCgCGCCGCCCAGcGCGc-CCAa -3'
miRNA:   3'- aGUUGCG-GCGGCGGGUUuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 21500 0.67 0.914751
Target:  5'- gCGACGCCGagugcaGCCC-AAACGcGCUAa -3'
miRNA:   3'- aGUUGCGGCgg----CGGGuUUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 21674 0.69 0.834851
Target:  5'- gCAguGCGaCGCCGCCCG--ACGAGCgCGa -3'
miRNA:   3'- aGU--UGCgGCGGCGGGUuuUGCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 22728 0.66 0.93101
Target:  5'- cCGcCGUCGCCGCCUAuacccucAAugGcGGCCAg -3'
miRNA:   3'- aGUuGCGGCGGCGGGU-------UUugC-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 23280 0.67 0.902321
Target:  5'- cCAGCaCCGCCGCgCCGuAAAUGuccACCAu -3'
miRNA:   3'- aGUUGcGGCGGCG-GGU-UUUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 23598 0.67 0.902321
Target:  5'- -uGAUGCCGCaGCCCAGc-CGGccGCCAg -3'
miRNA:   3'- agUUGCGGCGgCGGGUUuuGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 23687 0.66 0.945626
Target:  5'- aCGACcagGCUGCgGCCCAAuauacucAACGGcCCAa -3'
miRNA:   3'- aGUUG---CGGCGgCGGGUU-------UUGCUuGGU- -5'
6746 3' -54.1 NC_001875.2 + 24286 0.68 0.881861
Target:  5'- aCGGCGCCGCgcuUGUCCAuaGGGCGGAUa- -3'
miRNA:   3'- aGUUGCGGCG---GCGGGU--UUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 25815 0.67 0.914751
Target:  5'- cUCGGCGcCCGCCgagcacugcaacGCCCAGAugaagucgGGGCCAu -3'
miRNA:   3'- -AGUUGC-GGCGG------------CGGGUUUug------CUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 26610 0.73 0.586121
Target:  5'- -uGGCGCCaugacagGCCGCCCAAgcauGACGAgggcGCCAc -3'
miRNA:   3'- agUUGCGG-------CGGCGGGUU----UUGCU----UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.