miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 95 0.68 0.851368
Target:  5'- cCGAucCGCCGCCgGCCCA--AUGcACCAu -3'
miRNA:   3'- aGUU--GCGGCGG-CGGGUuuUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 1743 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 1791 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 1884 0.66 0.93101
Target:  5'- cCGcCGCCGCCGCCgCcAAugGuagauuuGGCCAc -3'
miRNA:   3'- aGUuGCGGCGGCGG-GuUUugC-------UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 3841 0.68 0.881861
Target:  5'- cCGGCGCgGCCGCagccuCCAAcauguGACGAuccGCCGc -3'
miRNA:   3'- aGUUGCGgCGGCG-----GGUU-----UUGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 4011 0.68 0.859319
Target:  5'- cCAACGCCG-CGCCCGucuGACuGcuCCAg -3'
miRNA:   3'- aGUUGCGGCgGCGGGUu--UUG-CuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 4385 0.68 0.888918
Target:  5'- gCGugGCgCGCUGCUCAAAuCG-GCCAu -3'
miRNA:   3'- aGUugCG-GCGGCGGGUUUuGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 5828 0.7 0.751996
Target:  5'- cCAGCGCCGCCGaUCuGGACGcGCCc -3'
miRNA:   3'- aGUUGCGGCGGCgGGuUUUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 6491 0.68 0.888918
Target:  5'- cCAACGCggagUGCCGCgCCAAcACGcuGGCCGc -3'
miRNA:   3'- aGUUGCG----GCGGCG-GGUUuUGC--UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 7336 0.68 0.886826
Target:  5'- gUCAGCGaCCuGCUGCCCGGccaaaccaucauguGuauCGAGCCGu -3'
miRNA:   3'- -AGUUGC-GG-CGGCGGGUU--------------Uu--GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 7603 0.71 0.701666
Target:  5'- gUCAuugUGCCGCCGCCCGcAACaacaaauuuGAACCc -3'
miRNA:   3'- -AGUu--GCGGCGGCGGGUuUUG---------CUUGGu -5'
6746 3' -54.1 NC_001875.2 + 8419 0.68 0.874571
Target:  5'- gUAACGCCGCgGUCUucAACGcGACCc -3'
miRNA:   3'- aGUUGCGGCGgCGGGuuUUGC-UUGGu -5'
6746 3' -54.1 NC_001875.2 + 8549 0.66 0.92564
Target:  5'- cCAAUGUuugcaggCGCUGCUCAAAuugcuCGAACCGg -3'
miRNA:   3'- aGUUGCG-------GCGGCGGGUUUu----GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 9722 0.7 0.790337
Target:  5'- --cGCGCCG-CGCCCGAAGCGuGgCAc -3'
miRNA:   3'- aguUGCGGCgGCGGGUUUUGCuUgGU- -5'
6746 3' -54.1 NC_001875.2 + 9895 0.68 0.867055
Target:  5'- gCAACGCUGCCGCgcgcaCCAcaaAGAUGuGGCCGc -3'
miRNA:   3'- aGUUGCGGCGGCG-----GGU---UUUGC-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 10051 0.68 0.874571
Target:  5'- cUCGACuaCGCCGUgCAGGAUGAAUg- -3'
miRNA:   3'- -AGUUGcgGCGGCGgGUUUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 10393 0.72 0.66024
Target:  5'- -gAACGCCGCCGCgCCGuggcGCGGcACCc -3'
miRNA:   3'- agUUGCGGCGGCG-GGUuu--UGCU-UGGu -5'
6746 3' -54.1 NC_001875.2 + 11206 0.68 0.881861
Target:  5'- aCGACGCCG-CGCC--GGACGAgaagGCCGu -3'
miRNA:   3'- aGUUGCGGCgGCGGguUUUGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 12066 0.72 0.691377
Target:  5'- aCAGCGUacaCGUCGCCCGucAGACGcACCGg -3'
miRNA:   3'- aGUUGCG---GCGGCGGGU--UUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 12181 0.68 0.867055
Target:  5'- cUguGCGCCGCCGCCgAGGuuuGCcuGGCCGu -3'
miRNA:   3'- -AguUGCGGCGGCGGgUUU---UGc-UUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.