miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 131790 0.71 0.742111
Target:  5'- uUCGcCGCCGCCGCCgAGu-UGAgcACCAa -3'
miRNA:   3'- -AGUuGCGGCGGCGGgUUuuGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 129166 0.68 0.859319
Target:  5'- -aGGCGCCGCaguuGCCCcAGGCGccGCCGg -3'
miRNA:   3'- agUUGCGGCGg---CGGGuUUUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 129027 0.69 0.808653
Target:  5'- cCAACGUCGCCGCgCuc-GCGcucGCCAg -3'
miRNA:   3'- aGUUGCGGCGGCGgGuuuUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 128886 0.71 0.732126
Target:  5'- gUCGACaCCGCUGCCgAgcAAGCGcGCCAg -3'
miRNA:   3'- -AGUUGcGGCGGCGGgU--UUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 128715 0.78 0.35168
Target:  5'- gCAGCGggcuUCGCCGCCCAGGucugcgcGCGAGCCGc -3'
miRNA:   3'- aGUUGC----GGCGGCGGGUUU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 127981 0.68 0.859319
Target:  5'- gCggUGCUGCCGUgCCAc-ACGAACCu -3'
miRNA:   3'- aGuuGCGGCGGCG-GGUuuUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 127565 0.66 0.926188
Target:  5'- aUCGgcGCGCUGCUGCacuuuuaCAGGAUGGacGCCAa -3'
miRNA:   3'- -AGU--UGCGGCGGCGg------GUUUUGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 127424 0.71 0.742111
Target:  5'- gUCAGCauGCCGCCGUgCAugagcaAGACGAugGCCGa -3'
miRNA:   3'- -AGUUG--CGGCGGCGgGU------UUUGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 126103 0.66 0.941475
Target:  5'- -aAGCGCCGCguCGCCaucAACG-ACCAc -3'
miRNA:   3'- agUUGCGGCG--GCGGguuUUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 125528 0.65 0.950006
Target:  5'- uUCGGCGCUGCCccaccauGCUUGuuGCGGugCAu -3'
miRNA:   3'- -AGUUGCGGCGG-------CGGGUuuUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 125174 0.66 0.926188
Target:  5'- cUCGAagcgGCCGuuGCCCAGAuugcGCGuGCUg -3'
miRNA:   3'- -AGUUg---CGGCggCGGGUUU----UGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 124830 0.67 0.914751
Target:  5'- gUCAgauacGCGCCGCCGgCCAGcAGCacACCc -3'
miRNA:   3'- -AGU-----UGCGGCGGCgGGUU-UUGcuUGGu -5'
6746 3' -54.1 NC_001875.2 + 124782 0.66 0.926188
Target:  5'- -uGGCGUCGCCGCagCGGAACcaGGCCGa -3'
miRNA:   3'- agUUGCGGCGGCGg-GUUUUGc-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 124282 0.68 0.867055
Target:  5'- gUCGACGacCCGCCGCCUuuGAUuagaAACCGg -3'
miRNA:   3'- -AGUUGC--GGCGGCGGGuuUUGc---UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 123265 0.7 0.780951
Target:  5'- cUCGAgGUCGgCGCCCGGuuCGAGCa- -3'
miRNA:   3'- -AGUUgCGGCgGCGGGUUuuGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 123030 0.67 0.89574
Target:  5'- --cGCGCCGCCuGCCCAAccCGAuucuCUg -3'
miRNA:   3'- aguUGCGGCGG-CGGGUUuuGCUu---GGu -5'
6746 3' -54.1 NC_001875.2 + 121192 0.67 0.920021
Target:  5'- ----aGuCCGCCGCCCAAGuacugcacgcuggGCGGcACCGg -3'
miRNA:   3'- aguugC-GGCGGCGGGUUU-------------UGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 120744 0.66 0.926188
Target:  5'- gCGGCGCCgagacgggGCCGUguCCAGGGCGcgcGCCAc -3'
miRNA:   3'- aGUUGCGG--------CGGCG--GGUUUUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 120743 0.71 0.711893
Target:  5'- gCGugGCCGCagaGCCCAAAcguccaaccGCGAagugcucgucGCCAa -3'
miRNA:   3'- aGUugCGGCGg--CGGGUUU---------UGCU----------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 119969 0.67 0.902321
Target:  5'- aCAcGCGCUGCCGCaCAAAcuguuCGGACCc -3'
miRNA:   3'- aGU-UGCGGCGGCGgGUUUu----GCUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.