miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 107769 1.01 0.01345
Target:  5'- cUCAACGCCGCCGCCCAAA-CGAACCAg -3'
miRNA:   3'- -AGUUGCGGCGGCGGGUUUuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 28722 0.87 0.096917
Target:  5'- -gGGCGCCGCCGCCgCcAAGCGAGCCAc -3'
miRNA:   3'- agUUGCGGCGGCGG-GuUUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 105348 0.81 0.253151
Target:  5'- gUCAACGCgGCCGCCUAuuGCGAaaACUAc -3'
miRNA:   3'- -AGUUGCGgCGGCGGGUuuUGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 40405 0.8 0.272312
Target:  5'- --cGCGCCGCCGCUCAGcuacAGCGAGCUg -3'
miRNA:   3'- aguUGCGGCGGCGGGUU----UUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 77673 0.78 0.336735
Target:  5'- gCAGCGCCGCUGUCCGAGcgcguauuugcGCGAcuGCCGc -3'
miRNA:   3'- aGUUGCGGCGGCGGGUUU-----------UGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 20651 0.78 0.336735
Target:  5'- aCGGCGCgCGCCGCCCAGcGCGc-CCAa -3'
miRNA:   3'- aGUUGCG-GCGGCGGGUUuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 128715 0.78 0.35168
Target:  5'- gCAGCGggcuUCGCCGCCCAGGucugcgcGCGAGCCGc -3'
miRNA:   3'- aGUUGC----GGCGGCGGGUUU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 56600 0.77 0.382957
Target:  5'- cCGACGCCGCCGCCaucgccgucgccguuAGGCGAcCCAa -3'
miRNA:   3'- aGUUGCGGCGGCGGgu-------------UUUGCUuGGU- -5'
6746 3' -54.1 NC_001875.2 + 70225 0.77 0.402765
Target:  5'- -aGGCGCCGCCgacacaGCCCGAAGCGccGCCGg -3'
miRNA:   3'- agUUGCGGCGG------CGGGUUUUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 33944 0.77 0.420509
Target:  5'- gUCGGCGCCGaCGCCCGcAACGuGCCc -3'
miRNA:   3'- -AGUUGCGGCgGCGGGUuUUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 31600 0.76 0.438716
Target:  5'- cCGGCGCCG-UGCCguGGGCGGACCAc -3'
miRNA:   3'- aGUUGCGGCgGCGGguUUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 66074 0.76 0.447988
Target:  5'- --cGCGCCGCCGCCCGccgcgcACGAauacGCCGa -3'
miRNA:   3'- aguUGCGGCGGCGGGUuu----UGCU----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 65727 0.76 0.46685
Target:  5'- gCGGCGCCgccucGCCGCCCGccgcGCGGGCCu -3'
miRNA:   3'- aGUUGCGG-----CGGCGGGUuu--UGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 85635 0.76 0.46685
Target:  5'- gCAGCGCCGCCacucaacgaGCUCGAAGCGGucuugaacGCCAc -3'
miRNA:   3'- aGUUGCGGCGG---------CGGGUUUUGCU--------UGGU- -5'
6746 3' -54.1 NC_001875.2 + 63995 0.75 0.475471
Target:  5'- gCAcCGCCGUCGCCCAAaaagcaaaaacugGACGAGCg- -3'
miRNA:   3'- aGUuGCGGCGGCGGGUU-------------UUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 48033 0.75 0.486114
Target:  5'- aCGugGCCGCCGCCCAcaggcacgaGGGCGcGCg- -3'
miRNA:   3'- aGUugCGGCGGCGGGU---------UUUGCuUGgu -5'
6746 3' -54.1 NC_001875.2 + 62619 0.75 0.495887
Target:  5'- aCAGCGCgCGUCGCCCGAAcaaGCGuacuGGCCGu -3'
miRNA:   3'- aGUUGCG-GCGGCGGGUUU---UGC----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 90323 0.75 0.495887
Target:  5'- aCGACaaCGCCGCCC-AAACGAugCAa -3'
miRNA:   3'- aGUUGcgGCGGCGGGuUUUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 103743 0.75 0.505747
Target:  5'- cCAACGCCucGCCGCCCAAcauguACGAAaCAa -3'
miRNA:   3'- aGUUGCGG--CGGCGGGUUu----UGCUUgGU- -5'
6746 3' -54.1 NC_001875.2 + 62575 0.75 0.515691
Target:  5'- ---uUGCCGCCGCCaCGGcuCGAGCCGc -3'
miRNA:   3'- aguuGCGGCGGCGG-GUUuuGCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.