miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 42453 0.72 0.691377
Target:  5'- gUCAGCgGCCGCUGC----GGCGAGCCAc -3'
miRNA:   3'- -AGUUG-CGGCGGCGgguuUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 59210 0.74 0.535807
Target:  5'- aCAGCagGCCGCCGCCgAuuACGucGCCAa -3'
miRNA:   3'- aGUUG--CGGCGGCGGgUuuUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 54660 0.74 0.576793
Target:  5'- -gAACGCCGUCGCCguuguCGGGCCAg -3'
miRNA:   3'- agUUGCGGCGGCGGguuuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 111905 0.73 0.607987
Target:  5'- --cGCGCCgGCCGCuCCGuguACGGGCCGg -3'
miRNA:   3'- aguUGCGG-CGGCG-GGUuu-UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 110503 0.72 0.649801
Target:  5'- aCGGCGCUGCuCGUCaaCAAGGCGGGCCc -3'
miRNA:   3'- aGUUGCGGCG-GCGG--GUUUUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 10393 0.72 0.66024
Target:  5'- -gAACGCCGCCGCgCCGuggcGCGGcACCc -3'
miRNA:   3'- agUUGCGGCGGCG-GGUuu--UGCU-UGGu -5'
6746 3' -54.1 NC_001875.2 + 33169 0.72 0.66024
Target:  5'- --cGCGCUGCCGCUCGAGGCacACCu -3'
miRNA:   3'- aguUGCGGCGGCGGGUUUUGcuUGGu -5'
6746 3' -54.1 NC_001875.2 + 48837 0.72 0.66024
Target:  5'- aCGGCGCCGCUucaaGCCCGccggcGACGAGCg- -3'
miRNA:   3'- aGUUGCGGCGG----CGGGUu----UUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 33453 0.72 0.681037
Target:  5'- uUCAGCGCgGCCGgCCAGuggucgaaaguGGCGcGCCGc -3'
miRNA:   3'- -AGUUGCGgCGGCgGGUU-----------UUGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 110762 0.74 0.535807
Target:  5'- gCGAcCGCCGCCgcgcgcuuuuGCCCAAAACGccgccGACCAc -3'
miRNA:   3'- aGUU-GCGGCGG----------CGGGUUUUGC-----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 29426 0.75 0.525713
Target:  5'- cUCGuCGCCGCgGCCCAAGuaguaGAACCc -3'
miRNA:   3'- -AGUuGCGGCGgCGGGUUUug---CUUGGu -5'
6746 3' -54.1 NC_001875.2 + 95739 0.75 0.525713
Target:  5'- gCGGCGCCGCCGCCgCGugcugccgcGCGAGCg- -3'
miRNA:   3'- aGUUGCGGCGGCGG-GUuu-------UGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 20651 0.78 0.336735
Target:  5'- aCGGCGCgCGCCGCCCAGcGCGc-CCAa -3'
miRNA:   3'- aGUUGCG-GCGGCGGGUUuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 128715 0.78 0.35168
Target:  5'- gCAGCGggcuUCGCCGCCCAGGucugcgcGCGAGCCGc -3'
miRNA:   3'- aGUUGC----GGCGGCGGGUUU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 70225 0.77 0.402765
Target:  5'- -aGGCGCCGCCgacacaGCCCGAAGCGccGCCGg -3'
miRNA:   3'- agUUGCGGCGG------CGGGUUUUGCu-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 31600 0.76 0.438716
Target:  5'- cCGGCGCCG-UGCCguGGGCGGACCAc -3'
miRNA:   3'- aGUUGCGGCgGCGGguUUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 65727 0.76 0.46685
Target:  5'- gCGGCGCCgccucGCCGCCCGccgcGCGGGCCu -3'
miRNA:   3'- aGUUGCGG-----CGGCGGGUuu--UGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 48033 0.75 0.486114
Target:  5'- aCGugGCCGCCGCCCAcaggcacgaGGGCGcGCg- -3'
miRNA:   3'- aGUugCGGCGGCGGGU---------UUUGCuUGgu -5'
6746 3' -54.1 NC_001875.2 + 90323 0.75 0.495887
Target:  5'- aCGACaaCGCCGCCC-AAACGAugCAa -3'
miRNA:   3'- aGUUGcgGCGGCGGGuUUUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 62575 0.75 0.515691
Target:  5'- ---uUGCCGCCGCCaCGGcuCGAGCCGc -3'
miRNA:   3'- aguuGCGGCGGCGG-GUUuuGCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.