Results 1 - 20 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6746 | 3' | -54.1 | NC_001875.2 | + | 107769 | 1.01 | 0.01345 |
Target: 5'- cUCAACGCCGCCGCCCAAA-CGAACCAg -3' miRNA: 3'- -AGUUGCGGCGGCGGGUUUuGCUUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 101893 | 0.73 | 0.607987 |
Target: 5'- aCAGCGCCGUCGCCUucGGCu-GCCu -3' miRNA: 3'- aGUUGCGGCGGCGGGuuUUGcuUGGu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 98603 | 0.73 | 0.618432 |
Target: 5'- -gAGCGCCGCgccgaaacggCGCCCG--GCGAGCCc -3' miRNA: 3'- agUUGCGGCG----------GCGGGUuuUGCUUGGu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 125528 | 0.65 | 0.950006 |
Target: 5'- uUCGGCGCUGCCccaccauGCUUGuuGCGGugCAu -3' miRNA: 3'- -AGUUGCGGCGG-------CGGGUuuUGCUugGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 56600 | 0.77 | 0.382957 |
Target: 5'- cCGACGCCGCCGCCaucgccgucgccguuAGGCGAcCCAa -3' miRNA: 3'- aGUUGCGGCGGCGGgu-------------UUUGCUuGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 33944 | 0.77 | 0.420509 |
Target: 5'- gUCGGCGCCGaCGCCCGcAACGuGCCc -3' miRNA: 3'- -AGUUGCGGCgGCGGGUuUUGCuUGGu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 85635 | 0.76 | 0.46685 |
Target: 5'- gCAGCGCCGCCacucaacgaGCUCGAAGCGGucuugaacGCCAc -3' miRNA: 3'- aGUUGCGGCGG---------CGGGUUUUGCU--------UGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 63995 | 0.75 | 0.475471 |
Target: 5'- gCAcCGCCGUCGCCCAAaaagcaaaaacugGACGAGCg- -3' miRNA: 3'- aGUuGCGGCGGCGGGUU-------------UUGCUUGgu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 65865 | 0.74 | 0.566468 |
Target: 5'- aUCAAaGaCCGCgGCCCAAAugGAauACCAu -3' miRNA: 3'- -AGUUgC-GGCGgCGGGUUUugCU--UGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 86919 | 0.73 | 0.59756 |
Target: 5'- -aGGCGCugaagCGCCGCCUAGAgugcgaggGCGAGCCGc -3' miRNA: 3'- agUUGCG-----GCGGCGGGUUU--------UGCUUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 55824 | 0.74 | 0.576793 |
Target: 5'- -aGGgGCCGCCGa-CGAAACGGGCCAg -3' miRNA: 3'- agUUgCGGCGGCggGUUUUGCUUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 103743 | 0.75 | 0.505747 |
Target: 5'- cCAACGCCucGCCGCCCAAcauguACGAAaCAa -3' miRNA: 3'- aGUUGCGG--CGGCGGGUUu----UGCUUgGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 28722 | 0.87 | 0.096917 |
Target: 5'- -gGGCGCCGCCGCCgCcAAGCGAGCCAc -3' miRNA: 3'- agUUGCGGCGGCGG-GuUUUGCUUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 26610 | 0.73 | 0.586121 |
Target: 5'- -uGGCGCCaugacagGCCGCCCAAgcauGACGAgggcGCCAc -3' miRNA: 3'- agUUGCGG-------CGGCGGGUU----UUGCU----UGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 105348 | 0.81 | 0.253151 |
Target: 5'- gUCAACGCgGCCGCCUAuuGCGAaaACUAc -3' miRNA: 3'- -AGUUGCGgCGGCGGGUuuUGCU--UGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 62619 | 0.75 | 0.495887 |
Target: 5'- aCAGCGCgCGUCGCCCGAAcaaGCGuacuGGCCGu -3' miRNA: 3'- aGUUGCG-GCGGCGGGUUU---UGC----UUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 87491 | 0.73 | 0.58716 |
Target: 5'- --cGCGaCCGCUGCCCGAu-CGAGCUAa -3' miRNA: 3'- aguUGC-GGCGGCGGGUUuuGCUUGGU- -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 29928 | 0.73 | 0.607987 |
Target: 5'- uUCGACGCCGCCGU--AAAGCG-GCCu -3' miRNA: 3'- -AGUUGCGGCGGCGggUUUUGCuUGGu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 40405 | 0.8 | 0.272312 |
Target: 5'- --cGCGCCGCCGCUCAGcuacAGCGAGCUg -3' miRNA: 3'- aguUGCGGCGGCGGGUU----UUGCUUGGu -5' |
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6746 | 3' | -54.1 | NC_001875.2 | + | 66074 | 0.76 | 0.447988 |
Target: 5'- --cGCGCCGCCGCCCGccgcgcACGAauacGCCGa -3' miRNA: 3'- aguUGCGGCGGCGGGUuu----UGCU----UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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