miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 125528 0.65 0.950006
Target:  5'- uUCGGCGCUGCCccaccauGCUUGuuGCGGugCAu -3'
miRNA:   3'- -AGUUGCGGCGG-------CGGGUuuUGCUugGU- -5'
6746 3' -54.1 NC_001875.2 + 67623 0.66 0.936628
Target:  5'- --uGCGCgGCUgacuGCCCGGGugGAACuCAa -3'
miRNA:   3'- aguUGCGgCGG----CGGGUUUugCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 1743 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 8549 0.66 0.92564
Target:  5'- cCAAUGUuugcaggCGCUGCUCAAAuugcuCGAACCGg -3'
miRNA:   3'- aGUUGCG-------GCGGCGGGUUUu----GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 109267 0.66 0.931533
Target:  5'- cCAACG-CGCCGCgCCcGGGCGuuaaAACCGa -3'
miRNA:   3'- aGUUGCgGCGGCG-GGuUUUGC----UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 15089 0.66 0.936628
Target:  5'- cCAGCaGCUGcCCGCCaucAggUGGGCCAg -3'
miRNA:   3'- aGUUG-CGGC-GGCGGgu-UuuGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 1884 0.66 0.93101
Target:  5'- cCGcCGCCGCCGCCgCcAAugGuagauuuGGCCAc -3'
miRNA:   3'- aGUuGCGGCGGCGG-GuUUugC-------UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 125174 0.66 0.926188
Target:  5'- cUCGAagcgGCCGuuGCCCAGAuugcGCGuGCUg -3'
miRNA:   3'- -AGUUg---CGGCggCGGGUUU----UGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 49798 0.66 0.926188
Target:  5'- --cGCGCCGCC-CCCAAcaaacuucuGGCuGGCCAc -3'
miRNA:   3'- aguUGCGGCGGcGGGUU---------UUGcUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 47992 0.66 0.931533
Target:  5'- -gGGCGUCgaGCCGCCCug---GAACCAg -3'
miRNA:   3'- agUUGCGG--CGGCGGGuuuugCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 85210 0.66 0.924536
Target:  5'- cCGACggGCCGCCGCgCGGuagcgccgcaugucGACGAGCgCGg -3'
miRNA:   3'- aGUUG--CGGCGGCGgGUU--------------UUGCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 111813 0.66 0.92564
Target:  5'- aCGGCGCCugGCUGCuCCGcguGAcggcugcGCGAGCCGg -3'
miRNA:   3'- aGUUGCGG--CGGCG-GGU---UU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 80304 0.66 0.941475
Target:  5'- -gAGCGCCGUCGCCagc-GCGu-CCGa -3'
miRNA:   3'- agUUGCGGCGGCGGguuuUGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 51137 0.66 0.931533
Target:  5'- uUCGACGCUGUCGUUCAAccggucGCGuuCCAa -3'
miRNA:   3'- -AGUUGCGGCGGCGGGUUu-----UGCuuGGU- -5'
6746 3' -54.1 NC_001875.2 + 27692 0.66 0.92564
Target:  5'- cCAucGCGCCGCCGUuuGAgccgcacAACGAGgCGa -3'
miRNA:   3'- aGU--UGCGGCGGCGggUU-------UUGCUUgGU- -5'
6746 3' -54.1 NC_001875.2 + 35479 0.66 0.926188
Target:  5'- gCAGCGCaUGUgCGCCagcAACGAGCCGa -3'
miRNA:   3'- aGUUGCG-GCG-GCGGguuUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 68717 0.66 0.941002
Target:  5'- ----gGCCGCgCGCCCGgccgcuaucccauGGACGAGCg- -3'
miRNA:   3'- aguugCGGCG-GCGGGU-------------UUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 1791 0.66 0.941475
Target:  5'- cCGcCGCCGCCGCCauuuccgucGGCGGaugugACCAc -3'
miRNA:   3'- aGUuGCGGCGGCGGguu------UUGCU-----UGGU- -5'
6746 3' -54.1 NC_001875.2 + 68890 0.66 0.92564
Target:  5'- uUUGACGCCG-CGUCCGGcgagugucgagucAACGAGCUg -3'
miRNA:   3'- -AGUUGCGGCgGCGGGUU-------------UUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 108200 0.66 0.931533
Target:  5'- -gGACGCCGuuGCgaAAAACGGcaaaaaaauuGCCAa -3'
miRNA:   3'- agUUGCGGCggCGggUUUUGCU----------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.