miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6746 3' -54.1 NC_001875.2 + 35479 0.66 0.926188
Target:  5'- gCAGCGCaUGUgCGCCagcAACGAGCCGa -3'
miRNA:   3'- aGUUGCG-GCG-GCGGguuUUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 63955 0.66 0.926188
Target:  5'- -aGGCGCUGUCGCCgAccgcGCuGAACCAg -3'
miRNA:   3'- agUUGCGGCGGCGGgUuu--UG-CUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 47404 0.66 0.926188
Target:  5'- cCGcCGCCGCCGCUCc---CGAuccGCCGa -3'
miRNA:   3'- aGUuGCGGCGGCGGGuuuuGCU---UGGU- -5'
6746 3' -54.1 NC_001875.2 + 127565 0.66 0.926188
Target:  5'- aUCGgcGCGCUGCUGCacuuuuaCAGGAUGGacGCCAa -3'
miRNA:   3'- -AGU--UGCGGCGGCGg------GUUUUGCU--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 68162 0.66 0.926188
Target:  5'- -gAACGCugcgCGCCGCgCAAGACGAuuaCAc -3'
miRNA:   3'- agUUGCG----GCGGCGgGUUUUGCUug-GU- -5'
6746 3' -54.1 NC_001875.2 + 120744 0.66 0.926188
Target:  5'- gCGGCGCCgagacgggGCCGUguCCAGGGCGcgcGCCAc -3'
miRNA:   3'- aGUUGCGG--------CGGCG--GGUUUUGCu--UGGU- -5'
6746 3' -54.1 NC_001875.2 + 118887 0.66 0.926188
Target:  5'- --cGCGCCGCCGC----GACGAgACCGu -3'
miRNA:   3'- aguUGCGGCGGCGgguuUUGCU-UGGU- -5'
6746 3' -54.1 NC_001875.2 + 125174 0.66 0.926188
Target:  5'- cUCGAagcgGCCGuuGCCCAGAuugcGCGuGCUg -3'
miRNA:   3'- -AGUUg---CGGCggCGGGUUU----UGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 124782 0.66 0.926188
Target:  5'- -uGGCGUCGCCGCagCGGAACcaGGCCGa -3'
miRNA:   3'- agUUGCGGCGGCGg-GUUUUGc-UUGGU- -5'
6746 3' -54.1 NC_001875.2 + 111813 0.66 0.92564
Target:  5'- aCGGCGCCugGCUGCuCCGcguGAcggcugcGCGAGCCGg -3'
miRNA:   3'- aGUUGCGG--CGGCG-GGU---UU-------UGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 68890 0.66 0.92564
Target:  5'- uUUGACGCCG-CGUCCGGcgagugucgagucAACGAGCUg -3'
miRNA:   3'- -AGUUGCGGCgGCGGGUU-------------UUGCUUGGu -5'
6746 3' -54.1 NC_001875.2 + 27692 0.66 0.92564
Target:  5'- cCAucGCGCCGCCGUuuGAgccgcacAACGAGgCGa -3'
miRNA:   3'- aGU--UGCGGCGGCGggUU-------UUGCUUgGU- -5'
6746 3' -54.1 NC_001875.2 + 8549 0.66 0.92564
Target:  5'- cCAAUGUuugcaggCGCUGCUCAAAuugcuCGAACCGg -3'
miRNA:   3'- aGUUGCG-------GCGGCGGGUUUu----GCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 85210 0.66 0.924536
Target:  5'- cCGACggGCCGCCGCgCGGuagcgccgcaugucGACGAGCgCGg -3'
miRNA:   3'- aGUUG--CGGCGGCGgGUU--------------UUGCUUG-GU- -5'
6746 3' -54.1 NC_001875.2 + 98307 0.67 0.920594
Target:  5'- cCGACGCCGUggugguuuCGCCCG--GCaAGCCGc -3'
miRNA:   3'- aGUUGCGGCG--------GCGGGUuuUGcUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 52523 0.67 0.920594
Target:  5'- gCAGCGCCG-CGCUCAucgaaagcACGcGCCAg -3'
miRNA:   3'- aGUUGCGGCgGCGGGUuu------UGCuUGGU- -5'
6746 3' -54.1 NC_001875.2 + 53527 0.67 0.920594
Target:  5'- uUUGGCGCaCGUCGUgcgcuaCCAGcGCGAGCCGc -3'
miRNA:   3'- -AGUUGCG-GCGGCG------GGUUuUGCUUGGU- -5'
6746 3' -54.1 NC_001875.2 + 84780 0.67 0.920594
Target:  5'- aUCu-CGCUGCCGCUCGcAACGuACUg -3'
miRNA:   3'- -AGuuGCGGCGGCGGGUuUUGCuUGGu -5'
6746 3' -54.1 NC_001875.2 + 31952 0.67 0.920594
Target:  5'- cUCGAgGCUGCCGgCgAcGACGAACg- -3'
miRNA:   3'- -AGUUgCGGCGGCgGgUuUUGCUUGgu -5'
6746 3' -54.1 NC_001875.2 + 121192 0.67 0.920021
Target:  5'- ----aGuCCGCCGCCCAAGuacugcacgcuggGCGGcACCGg -3'
miRNA:   3'- aguugC-GGCGGCGGGUUU-------------UGCU-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.