miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6747 5' -53.5 NC_001875.2 + 2844 0.67 0.902761
Target:  5'- aGCUgGGCGaauaguuuaACAGggUGGGCGAGCGc -3'
miRNA:   3'- -CGAgUCGCgg-------UGUCa-ACCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 3877 0.66 0.927138
Target:  5'- aGCaCcGCGCCGCcaAGcUGGGCAGGCu- -3'
miRNA:   3'- -CGaGuCGCGGUG--UCaACCCGUUUGuu -5'
6747 5' -53.5 NC_001875.2 + 4731 0.69 0.797033
Target:  5'- aGCU--GUGCC-CAGUUGGGCcAGCAu -3'
miRNA:   3'- -CGAguCGCGGuGUCAACCCGuUUGUu -5'
6747 5' -53.5 NC_001875.2 + 11110 0.72 0.664183
Target:  5'- uCUCGGCGCCGCAGcUGcaauuGGCAAuucGCGAa -3'
miRNA:   3'- cGAGUCGCGGUGUCaAC-----CCGUU---UGUU- -5'
6747 5' -53.5 NC_001875.2 + 22871 0.66 0.939749
Target:  5'- uGCgucCAGCaGCUugucggccaauucuuGCAGUUGGGCGGAUu- -3'
miRNA:   3'- -CGa--GUCG-CGG---------------UGUCAACCCGUUUGuu -5'
6747 5' -53.5 NC_001875.2 + 30493 0.67 0.902761
Target:  5'- aCUCGGCGUC-CAGUUuGGCG-ACAAa -3'
miRNA:   3'- cGAGUCGCGGuGUCAAcCCGUuUGUU- -5'
6747 5' -53.5 NC_001875.2 + 36422 0.71 0.685503
Target:  5'- gGC-CGGCGCCGCGGUgucGGGCugguGCu- -3'
miRNA:   3'- -CGaGUCGCGGUGUCAa--CCCGuu--UGuu -5'
6747 5' -53.5 NC_001875.2 + 37987 0.74 0.51576
Target:  5'- cGCUCAGCGCCgACAaccGUUGGuGCAuuACGGg -3'
miRNA:   3'- -CGAGUCGCGG-UGU---CAACC-CGUu-UGUU- -5'
6747 5' -53.5 NC_001875.2 + 38768 0.68 0.87429
Target:  5'- -gUCGGCGUC-CuGUUGGGCGGAgAGc -3'
miRNA:   3'- cgAGUCGCGGuGuCAACCCGUUUgUU- -5'
6747 5' -53.5 NC_001875.2 + 42907 0.73 0.58916
Target:  5'- gGCUguGCGCCGCAugccgUGGGCGucGCAGu -3'
miRNA:   3'- -CGAguCGCGGUGUca---ACCCGUu-UGUU- -5'
6747 5' -53.5 NC_001875.2 + 51937 0.66 0.915472
Target:  5'- aGCgugCGGCGCUACu-UUGGGCGcGACGu -3'
miRNA:   3'- -CGa--GUCGCGGUGucAACCCGU-UUGUu -5'
6747 5' -53.5 NC_001875.2 + 54358 0.68 0.866563
Target:  5'- ----cGCGCCcgGCGcGUUGGGCGAGCGc -3'
miRNA:   3'- cgaguCGCGG--UGU-CAACCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 57580 0.66 0.917889
Target:  5'- gGCgCGGCGUCGCgcuguccagaagcguGGUguaGGGCAGGCAc -3'
miRNA:   3'- -CGaGUCGCGGUG---------------UCAa--CCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 59341 0.67 0.902761
Target:  5'- gGCUgCAGUGCCACAuuugcugcucGgUGGGCGAAauCAAa -3'
miRNA:   3'- -CGA-GUCGCGGUGU----------CaACCCGUUU--GUU- -5'
6747 5' -53.5 NC_001875.2 + 59928 0.69 0.787506
Target:  5'- cGCUCGccgacGCGCaCGCccagUGGGCGGACAAg -3'
miRNA:   3'- -CGAGU-----CGCG-GUGuca-ACCCGUUUGUU- -5'
6747 5' -53.5 NC_001875.2 + 61507 0.71 0.703475
Target:  5'- gGCUCGGCGCCGCAGUccgcgugcucgcgcUuGGCGGcCAu -3'
miRNA:   3'- -CGAGUCGCGGUGUCA--------------AcCCGUUuGUu -5'
6747 5' -53.5 NC_001875.2 + 62393 0.75 0.485407
Target:  5'- uGCUgAGuCGCCGCGGguuuuauugcgUGGGCAAGCGu -3'
miRNA:   3'- -CGAgUC-GCGGUGUCa----------ACCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 68994 0.7 0.747962
Target:  5'- uGUggAGUGCCGCGG--GGGCAAGCAc -3'
miRNA:   3'- -CGagUCGCGGUGUCaaCCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 71143 0.74 0.505553
Target:  5'- cCUCAGCGCgGCcgcGUUGGGCAuuACAGa -3'
miRNA:   3'- cGAGUCGCGgUGu--CAACCCGUu-UGUU- -5'
6747 5' -53.5 NC_001875.2 + 74061 0.71 0.704527
Target:  5'- uGCUCGgcguggauugugcGCGCCccucgcaaaaccuGCAGUUGGGCAgcGACGc -3'
miRNA:   3'- -CGAGU-------------CGCGG-------------UGUCAACCCGU--UUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.